Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0536 ATGGATAATAAGCAGATTGTGGTGGTTCAAAGATATGAATTAGGGAGATTGCTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCGAGGAATACAGGAACTAATCAAAGTGTGGCCATGAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTACATCTATATGAGGTTATGGCCACCAAGACAAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAAGGAGGATGTTGCTTGGAAGTACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTCTCTGATTTTGGTTTAAGTGCTCTAGCCGAGTCCAAGCGTCAAGATGGGTTGCTACACACTACTTGTGGTACTCCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCGAATTTGATGGAGATGTATAGGAAGATTGGAAGAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGATGTACGGAGGCTATTAACGAGGATGCTTGATCCAAACCCCATTACTAGAACTTCCATAGCAATGATAAGGCAAAGTTCTTGGTTTAAAAAAGGATTGAGGTCTAAGATGTTTAAAAGTGAAACACGAAGTGATGCTATACTGACTGAAGATGCAGCAGCTGTTTCTGGACCATCTGAGAATAGCATGCCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCGACTTTGAATGCGTTCGATATCATCTCCCTTTCTGCTGGGTTCAATCTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCCAAGCTAGAAGAAATTGCTAAACTTCTCAGGTTTCGAGTGCAAAAGAAGGAAGCAGGCCTACTGAAGTTTGAGGCGCTAACAGAGGGTAAAAAGGGGGCATTGTCCATTGATACAGAGATCTTTGAGGTTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCAAATGGGGACACATTGGAATATCAGAAGATATTGAAAGAAGATATAAGACCAGCTCTACAGGATATTGTATGGGTATGGCGAGGAGAGCAGGAGGAGCAGCAGCAGCAACAACCTCAGCCTCAGCCTCAGCCTCTCCAATTGCAGGATCGGGATCGGTATCCATGTCCGGAGCAAGAGGGTGCGTCACGACAGCAGTGCCAGCTCGAAGAAGAAAAACTCCCAAAACCTGGTTTGCAAGGATCTTCATGA 1476 42.41 MDNKQIVVVQRYELGRLLGQGTFAKVYYARNTGTNQSVAMKVIDKEKITKASLIDQIKREISIMRLVRHPNIVHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRADYKCPSWFPRDVRRLLTRMLDPNPITRTSIAMIRQSSWFKKGLRSKMFKSETRSDAILTEDAAAVSGPSENSMPADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEIAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEEQQQQQPQPQPQPLQLQDRDRYPCPEQEGASRQQCQLEEEKLPKPGLQGSS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3750566 3753434 + Tan0006624.1 Tan05g0536 751844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0536 491 CDD CIPK_C 315 429 - -
Tan05g0536 491 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Tan05g0536 491 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0536 491 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan05g0536 491 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Tan05g0536 491 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0536 491 MobiDBLite consensus disorder prediction 439 491 - -
Tan05g0536 491 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Tan05g0536 491 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Tan05g0536 491 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0536 491 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Tan05g0536 491 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Tan05g0536 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g0536 491 FunFam Non-specific serine/threonine protein kinase 2 290 - -
Tan05g0536 491 Gene3D Transferase(Phosphotransferase) domain 1 3 307 - -
Tan05g0536 491 Gene3D Kinase associated domain 1, KA1 309 434 - -
Tan05g0536 491 MobiDBLite consensus disorder prediction 439 455 - -
Tan05g0536 491 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0726 Tan-Chr3:62935361 Tan05g0536 Tan-Chr5:3750566 1.70E-175 dispersed
Tan05g0536 Tan-Chr5:3750566 Tan05g2507 Tan-Chr5:76422353 5.40E-166 dispersed
Tan05g0536 Tan-Chr5:3750566 Tan05g0537 Tan-Chr5:3755413 2.20E-114 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67572 PF00069 Pkinase 1.30E-74 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0536 - - - 0.0