Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0540 ATGTTCAAGAATACTCGAGCTGGGAATCCCAGCAGCAACCACCATGATTCGAACTCGGAATTTGGGTACGTTGAGACCGATCCGACAGGTCGTTACGGCCGTTTTGAAGAAGTCTTGGGAAAAGGGGCCATGAAGACAGTGTATAAAGCCATTGACGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAATGAAGTCCTCCGATCACCCGAGGATCTGCAGCGGCTGTATTCGGAAGTTCACTTACTTAGCACGCTTAAGCACGAATCAATCATGCGATTCTACACCTCTTGGATCGATGTTGATCGCAAAACCTTCAACTTCATTACCGAACTGTTTACTTCTGGAACACTCAGAGAATATGGGAAGAAATATAGGCAAGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAAATCCTGCAGGGGCTCATTTATTTGCACGAGCACGATCCTCCGATAATACACCGAGATTTGAAGTGCGATAACATCTTTGTCAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGCTCTAGATCCGCTCACAGTGTTATAGGCACACCAGAGTTTATGGCACCGGAATTATACGAGGAGAATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTGGAGATGCTTACTGCTGAGTATCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCGTTGTACAAGATTCAGGACGTGGAAGCGCAGAAATTTATTAAGAAATGCTTGGTACCAGTATCAATGAGGGCGTCTGCAAAGGAACTGTTGGATGATCCTTTTCTCATGGTTGATGGAGATAGACCTTCCTTGAAGGAGAGGAATCACAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACGAACATGACGATCACGGGGAAGCTGAACCCCGAAGACGATACCCTCTTTCTCAGAGTTCAGACTGCAGATAAAAATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTGAACGATACAGCATTAGATGTGGCGATGGAAATGGTGAAAGAGTTGGAGATCTCTGATTGGGAGCCGTTCGAAATAGCAGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTATCCAACCATAGCCTCAGCTTCAGCTATGCAGAAGAAGACGATGTTGCATCTCATCATACGTACCGCTCTATCTCCTCGTCGTCCCAAGCAACAACTTTGGGTCTCACCACCTCCCCAAGAACAAATCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGATGATGCACTTGATGATAGCAGTTCCCAGTGCTCGTCAGCATCGGGAGCGTACTCCAACTTGAATTACATCAGCAGCGACGAGTACGAGACCAGTATGAGTTCAGTCCGAATAGACCAACATAACAACATCAATAAGATTCACAACTCCTCAAGATTTTGTCCCATTGAGAACCGCAGAAACAAGGATTTCTTGGCCGGACTTTTATACAAGCAGAGCCAATGTGCGGTAGGGCCATCTCAAGGAGCTGCCTCTGGCCGTAAAGACAAGAGGGGGGGAGTGGATGGTCGTAGATTAACAAGAAACAGATCCCTAGTTGATGTACATAGCCAATTGTTACATCGTTCGTTGGTCGAGGAAGTGAATAGAAGACGGTTATTCAAGACAGTTGGAGCAGTTGAAAGCATCGGTTTTCAAGCACCTTGTGAGGTTTCTTCCAACAAAAGGGTCTCGAGTAGGCAAACGATCTGGAACCGAAGTAGCGATGTATCGAGAGCAGGGAGAAATGACGATATTAGGCAAGATGTTGGAAGGAGAACATGA 1935 46.1 MFKNTRAGNPSSNHHDSNSEFGYVETDPTGRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRQVDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTAEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVEAQKFIKKCLVPVSMRASAKELLDDPFLMVDGDRPSLKERNHNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDDTLFLRVQTADKNGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHSLSFSYAEEDDVASHHTYRSISSSSQATTLGLTTSPRTNQNISNGFSWFPDDALDDSSSQCSSASGAYSNLNYISSDEYETSMSSVRIDQHNNINKIHNSSRFCPIENRRNKDFLAGLLYKQSQCAVGPSQGAASGRKDKRGGVDGRRLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSNKRVSSRQTIWNRSSDVSRAGRNDDIRQDVGRRT 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3779961 3784191 - Tan0015509.1 Tan05g0540 751848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0540 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan05g0540 644 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0540 644 MobiDBLite consensus disorder prediction 1 24 - -
Tan05g0540 644 MobiDBLite consensus disorder prediction 628 644 - -
Tan05g0540 644 FunFam Probable serine/threonine-protein kinase WNK1 17 114 - -
Tan05g0540 644 MobiDBLite consensus disorder prediction 624 644 - -
Tan05g0540 644 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0540 644 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Tan05g0540 644 CDD STKc_WNK 31 291 - -
Tan05g0540 644 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 600 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Tan05g0540 644 Pfam Protein kinase domain 36 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan05g0540 644 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Tan05g0540 644 Gene3D Transferase(Phosphotransferase) domain 1 116 295 - -
Tan05g0540 644 MobiDBLite consensus disorder prediction 542 562 - -
Tan05g0540 644 SUPERFAMILY Protein kinase-like (PK-like) 34 446 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0719 Tan-Chr3:62706325 Tan05g0540 Tan-Chr5:3779961 1.10E-174 dispersed
Tan05g0540 Tan-Chr5:3779961 Tan06g2524 Tan-Chr6:77851752 7.70E-136 dispersed
Tan05g0540 Tan-Chr5:3779961 Tan03g2516 Tan-Chr3:78512855 4.70E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67574 PF00069 Pkinase 2.40E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0540 K08867 - csv:101203757 1141.33