Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0565 ATGATACTACGCTCACAAGCGTCATCTGTTTTCATGATTTCCTCTACTGTTACTGATAATCACACGTACAAGTATCACAGGCAGCAACAACAGCTTCGTGATTACGGCGATGGAGCTAGTTTTCATGTTCGTGTTCCTTTTCGTGTTTGTAAACTTTTACCTCCAACGGCGGCGGTCACGGCCGTTTCCAGCGGCGGAAGTCTCGCTAGAAGTAAATCTAGGAGTCGTTTCATGAACGTTCGGTCTTCTGCAACTGCCTCCGATTTTTCCTCCTCGATTCAGCCGCCGGATGATCCAACGCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCTGGACCTGATCTGAAAATGCTTCTGAAGAGGTTCTGGAAAGTGGCTGCACCTTATTGGTTTTCGGATGACAAAGTGCAAGCTCGATGGCAGCTAGCTGCTGTCTTCGCTCTGACCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGCGACTTCTATAACGCTCTTGCTAACAAGGACCAAGAACAGTTCACTAAGCAACTTCTCTACTACCTTGGTGCCTTTGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGATCATGGATGACAAAACACTACATGGAGCGTTATCTAAAGAACCAGTCTTTCTATAAAATTCAGTCCCAATCCATTATTGATAATCCGGACCAGCGGATTGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTGTCATTTTCTTTGGCACTTTTCAATTCTACTGTGGATTTGATTTCATTTAGTAACATCTTGTATGGTATCTATCCACCATTGTTTGTCATTCTTCTTTTATATTCTATTGGAGGAACGGCAATTAGTGTTTTCCTTGGAAAGGGTTTGGTTAATCTAAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTTCGCATTCGTGAAAATGCTGAATCAATTGCTTTTTATGGCGGTGAAGAAAATGAGATGCAACTTATTCTGCAGCGTTTCAGAAGTGCTGTTGAGAATCTGACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTACCGCTACCTCATTCAGATTCTTCCAGCTGCCGTTGTTGCCCCAATGTACTTTTCTGGGAAAATAGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTTAATCACATCCTTGGGGATTTTTCCATCATTGTATACCAGTTTCAGGCCATAAGTGCTTTTTCAGCAATTATTGATCGCCTAGGCGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATATGGAAAGTTCACCTCTTTTAGAATCAAATGGATCCATGACCCCAGACAAACGTCGGAAATTATTGGAGATAGAAAATTTGACTTTAGGGGCACCAAATGGAGCTACTTTGGTCAGAGACTTGGCATTAATAGTTAAAGAAAAGGAGCATTTGCTGGTAATGGGACCTAGTGGATGTGGAAAGACTTCTTTGTTAAGAGTTTTGGCAGGTCTTTGGAATGTTGGAAAAGGAAAAATCACATTTTATATAAAAGACTATCCCGAGCAGATAGTTTCTCAAAATGGAGTGCCCACCGAAGCACATACAGGAGAAGATGCATCCGAAGAAAATAGTAGACCACTCAACAAAAATTATCAAGGGATATTTTTCCTTCCTCAAAGACCATACATGGTTTTGGGTACACTACGTCAGCAACTGCTTTATCCTACTTGGGCTGAAGGTGCAGTCACATCAGGTTATGCTGAACCAAATGTATTCCCTTCCTTTTTGACGGGTGCATCAAATATCAACAAGGTTAGTGAAAATCCTGACAAACCAACAACAGATGACCTAATCCAGGTTCTGGACAAAGTCGGTCTTGGCTACCTCTTGGCTCGTTTTAGTAGTCTGGATATAACTTGCGAATGGTCCAGTGTTCTTTCTCTGGGTGAGCAGCAACGTATTGCTTTTGCACGTCTATTGCTTTCAAGACCAAAGTTAGTCCTGCTGGATGAGTCTACAAGTGCTTTGGATGAAGCAAATGAGGCACGTTTATACAAGCAAATTGCAGCAGCTGGAATAACATATATCAGCATTGGCCATCGACGAACTTTACGCAATCACCATAACAATATTTTGCATATATCCAAGTTGTCCAGCGGCAATCAACGCAATTGGAACATTGAACCTATTCTTCGTGATGATTTGTACGAATTATCGAAGCAGTAA 2322 42.12 MILRSQASSVFMISSTVTDNHTYKYHRQQQQLRDYGDGASFHVRVPFRVCKLLPPTAAVTAVSSGGSLARSKSRSRFMNVRSSATASDFSSSIQPPDDPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWFSDDKVQARWQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKNQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVILLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHMESSPLLESNGSMTPDKRRKLLEIENLTLGAPNGATLVRDLALIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQIVSQNGVPTEAHTGEDASEENSRPLNKNYQGIFFLPQRPYMVLGTLRQQLLYPTWAEGAVTSGYAEPNVFPSFLTGASNINKVSENPDKPTTDDLIQVLDKVGLGYLLARFSSLDITCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAAAGITYISIGHRRTLRNHHNNILHISKLSSGNQRNWNIEPILRDDLYELSKQ 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4005822 4018875 - Tan0022322.1 Tan05g0565 751873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0565 773 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 82 760 IPR050835 -
Tan05g0565 773 MobiDBLite consensus disorder prediction 83 114 - -
Tan05g0565 773 SMART AAA_5 512 750 IPR003593 GO:0016887(InterPro)
Tan05g0565 773 MobiDBLite consensus disorder prediction 83 97 - -
Tan05g0565 773 Gene3D ABC transporter type 1, transmembrane domain 106 443 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Tan05g0565 773 Pfam ABC transporter transmembrane region 2 134 394 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Tan05g0565 773 CDD ABCD_peroxisomal_ALDP 487 748 - -
Tan05g0565 773 SUPERFAMILY ABC transporter transmembrane region 123 440 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Tan05g0565 773 Pfam ABC transporter 504 706 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g0565 773 ProSitePatterns ABC transporters family signature. 678 692 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g0565 773 Gene3D - 475 755 IPR027417 -
Tan05g0565 773 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 146 429 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Tan05g0565 773 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 773 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g0565 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 747 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1422 Tan-Chr1:14119401 Tan05g0565 Tan-Chr5:4005822 1.40E-43 dispersed
Tan01g1423 Tan-Chr1:14119401 Tan05g0565 Tan-Chr5:4005822 1.40E-43 dispersed
Tan05g0565 Tan-Chr5:4005822 Tan08g1711 Tan-Chr8:68859594 7.30E-08 dispersed
Tan05g0565 Tan-Chr5:4005822 Tan08g1860 Tan-Chr8:70858074 2.90E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0565 - - - 0.0