Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0573 ATGCCCCTAACAGCGTGGTTGAGCAATATGGGAAACTTGGTCAGCTCGTCTTCCAAACGGAGTGACGGCGGAGCTCGCGGCGGCGAAAAGCCTGGCAAAACCGCTACAGAAACGTCGCTTAAGAAGACTGTCAGCGGCGGCAGCAGCCGTGGAAAGGCCTCGCGGCGGTGGTCTGAGAAGAAGGCTTCTTTTCGGAAGAAATATGGTTTCATTGCAGATAATTTCTCCTCCATTGACCAGGTTACAGAAGCCTTGAGAAAAGAAGGATTAGAATCGTCAAACCTCATCGTCGGAATTGATTTCACCAAAAGTAACGAGTGGACAGGTAAAGTCTCGTTCAATAATCAGAGCTTGCACTCGGTCTCCGATTCTCCTAATCCCTACGAGAAAGCTTTGTCGATCATTGGGAAAACTCTGGCTCCCTTCGACGACGACGGCTTAATTCCTTGCTTCGGTTTTGGCGACGCGACGACACACGATCAAGAGGTCTTCAGTTTCCACAGCGACAATTCGTCGTGCCATGGATTTGAAGAAGTTTTGGACTGCTACAAAAGGATAATTCCGAATGTGCAACTTTCAGGGCCAACTTCTTACGGTCCCGTGGTTGAAGCTGCAATGGACATTGTGGAGAAGAGTAATGGCCAATTTCATATCCTTCTCATCGTTGCAGATGGACAGGTTACTCGAAGCTCGAGTGTTGGCGAAGGTGAATTGAGTGTTCAAGAAGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCAATTATTCTCGTTGGAGTCGGAGACGGGCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCACGAGATTTCGATAATTTTCAGTTTGTTAACTTCACTGAGATCATGTCCAGAAACACCGCCACGCCTGAAAAAGAAGCAGCTTTTGCTCTAGCTGCACTTATGGAGGTTCCTTTACAATACAAAGCCGTCATTGAAATGGATCTTCTAGGACATGCGACTGGAAAACCAAAAAGAATTCTTCCACGACCCCCACCGACCCTTCAGACTCGTCCTGCACGACTTACTAATACTCCCAAACCCAGCAACACCTCCTCCACTTCTGCATCTGATGATCGGAGTCAGGTCTGCCCCATTTGCTTGACCGAGGGAAAGGATTTGGCCTTTGGATGCGGCCACATGACCTGTAGAGACTGTGGTTCAAGATTATCCAATTGCCATATATGTCGCCAGCCTATCAAAAACCGCATAAGGCTATATACCGGGTGA 1269 47.83 MPLTAWLSNMGNLVSSSSKRSDGGARGGEKPGKTATETSLKKTVSGGSSRGKASRRWSEKKASFRKKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNQSLHSVSDSPNPYEKALSIIGKTLAPFDDDGLIPCFGFGDATTHDQEVFSFHSDNSSCHGFEEVLDCYKRIIPNVQLSGPTSYGPVVEAAMDIVEKSNGQFHILLIVADGQVTRSSSVGEGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSRNTATPEKEAAFALAALMEVPLQYKAVIEMDLLGHATGKPKRILPRPPPTLQTRPARLTNTPKPSNTSSTSASDDRSQVCPICLTEGKDLAFGCGHMTCRDCGSRLSNCHICRQPIKNRIRLYTG 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4143281 4149648 + Tan0001806.1 Tan05g0573 751881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0573 422 MobiDBLite consensus disorder prediction 37 52 - -
Tan05g0573 422 MobiDBLite consensus disorder prediction 350 372 - -
Tan05g0573 422 MobiDBLite consensus disorder prediction 335 372 - -
Tan05g0573 422 Pfam Zinc finger, C3HC4 type (RING finger) 374 415 - -
Tan05g0573 422 SUPERFAMILY RING/U-box 372 416 - -
Tan05g0573 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 421 IPR013083 -
Tan05g0573 422 SMART VWA_4 92 295 IPR002035 -
Tan05g0573 422 MobiDBLite consensus disorder prediction 13 58 - -
Tan05g0573 422 Pfam Copine 117 331 IPR010734 -
Tan05g0573 422 SUPERFAMILY vWA-like 94 275 IPR036465 -
Tan05g0573 422 ProSiteProfiles Zinc finger RING-type profile. 377 410 IPR001841 -
Tan05g0573 422 PANTHER COPINE FAMILY PROTEIN 1 34 420 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0573 K16280 - - csv:101218058 654.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0573 Tan-Chr5:4143281 Tan11g0670 Tan-Chr11:5871332 1.20E-121 dispersed
Tan05g0573 Tan-Chr5:4143281 Tan11g0669 Tan-Chr11:5871332 1.20E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55