Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0573 ATGCCCCTAACAGCGTGGTTGAGCAATATGGGAAACTTGGTCAGCTCGTCTTCCAAACGGAGTGACGGCGGAGCTCGCGGCGGCGAAAAGCCTGGCAAAACCGCTACAGAAACGTCGCTTAAGAAGACTGTCAGCGGCGGCAGCAGCCGTGGAAAGGCCTCGCGGCGGTGGTCTGAGAAGAAGGCTTCTTTTCGGAAGAAATATGGTTTCATTGCAGATAATTTCTCCTCCATTGACCAGGTTACAGAAGCCTTGAGAAAAGAAGGATTAGAATCGTCAAACCTCATCGTCGGAATTGATTTCACCAAAAGTAACGAGTGGACAGGTAAAGTCTCGTTCAATAATCAGAGCTTGCACTCGGTCTCCGATTCTCCTAATCCCTACGAGAAAGCTTTGTCGATCATTGGGAAAACTCTGGCTCCCTTCGACGACGACGGCTTAATTCCTTGCTTCGGTTTTGGCGACGCGACGACACACGATCAAGAGGTCTTCAGTTTCCACAGCGACAATTCGTCGTGCCATGGATTTGAAGAAGTTTTGGACTGCTACAAAAGGATAATTCCGAATGTGCAACTTTCAGGGCCAACTTCTTACGGTCCCGTGGTTGAAGCTGCAATGGACATTGTGGAGAAGAGTAATGGCCAATTTCATATCCTTCTCATCGTTGCAGATGGACAGGTTACTCGAAGCTCGAGTGTTGGCGAAGGTGAATTGAGTGTTCAAGAAGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCAATTATTCTCGTTGGAGTCGGAGACGGGCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCACGAGATTTCGATAATTTTCAGTTTGTTAACTTCACTGAGATCATGTCCAGAAACACCGCCACGCCTGAAAAAGAAGCAGCTTTTGCTCTAGCTGCACTTATGGAGGTTCCTTTACAATACAAAGCCGTCATTGAAATGGATCTTCTAGGACATGCGACTGGAAAACCAAAAAGAATTCTTCCACGACCCCCACCGACCCTTCAGACTCGTCCTGCACGACTTACTAATACTCCCAAACCCAGCAACACCTCCTCCACTTCTGCATCTGATGATCGGAGTCAGGTCTGCCCCATTTGCTTGACCGAGGGAAAGGATTTGGCCTTTGGATGCGGCCACATGACCTGTAGAGACTGTGGTTCAAGATTATCCAATTGCCATATATGTCGCCAGCCTATCAAAAACCGCATAAGGCTATATACCGGGTGA 1269 47.83 MPLTAWLSNMGNLVSSSSKRSDGGARGGEKPGKTATETSLKKTVSGGSSRGKASRRWSEKKASFRKKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNQSLHSVSDSPNPYEKALSIIGKTLAPFDDDGLIPCFGFGDATTHDQEVFSFHSDNSSCHGFEEVLDCYKRIIPNVQLSGPTSYGPVVEAAMDIVEKSNGQFHILLIVADGQVTRSSSVGEGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSRNTATPEKEAAFALAALMEVPLQYKAVIEMDLLGHATGKPKRILPRPPPTLQTRPARLTNTPKPSNTSSTSASDDRSQVCPICLTEGKDLAFGCGHMTCRDCGSRLSNCHICRQPIKNRIRLYTG 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4143281 4149648 + Tan0001806.1 Tan05g0573 751881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0573 422 MobiDBLite consensus disorder prediction 37 52 - -
Tan05g0573 422 MobiDBLite consensus disorder prediction 350 372 - -
Tan05g0573 422 MobiDBLite consensus disorder prediction 335 372 - -
Tan05g0573 422 Pfam Zinc finger, C3HC4 type (RING finger) 374 415 - -
Tan05g0573 422 SUPERFAMILY RING/U-box 372 416 - -
Tan05g0573 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 421 IPR013083 -
Tan05g0573 422 SMART VWA_4 92 295 IPR002035 -
Tan05g0573 422 MobiDBLite consensus disorder prediction 13 58 - -
Tan05g0573 422 Pfam Copine 117 331 IPR010734 -
Tan05g0573 422 SUPERFAMILY vWA-like 94 275 IPR036465 -
Tan05g0573 422 ProSiteProfiles Zinc finger RING-type profile. 377 410 IPR001841 -
Tan05g0573 422 PANTHER COPINE FAMILY PROTEIN 1 34 420 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0573 Tan-Chr5:4143281 Tan11g0670 Tan-Chr11:5871332 1.20E-121 dispersed
Tan05g0573 Tan-Chr5:4143281 Tan11g0669 Tan-Chr11:5871332 1.20E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0573 K16280 - csv:101218058 654.055