Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0577 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGAGTTCCCATGAAAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCGAAGCCCCGCCTCCGCTGGACCGTCGAGCTCCACGATCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCCGACAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTCAGACTCGGAAAGCAACCTCACAAGGAATTCAATGATCAAGCAATAAAGGATGGTATGAGAGCTTCAGCCTTAGAACTTCAGAGGAACAGTGGATCTTCCTCCACCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGACGACTTCATGAACAAATTGAGGTACAAAGACATCTCCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGTCCGCCGCCACTGCCGCCGCCACCGGACCTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACTCCTTCCCTCCTTTTCAAGACATCAACAACGTCCTATTTACCTCCGAAGCGCCGCCACCGCCGCCTCTCATCGACTGCCTGAAGAAGCCCAGCCCCTTCATCTCCGGTGCCGGTAAGAACCCCATTTTCTGGCCGGACGATCTCCGGCTCCAGGATTTAGGAACCCCTCCAGCAACCCTAGCTCCACCGCCGCCATCCATCGGCGGCCCGGCTGACTTGGATACTCTTCAGCTGGAAATGTATGAAACTAAACCGCCGCCACCGCAACCGTTACTCGCCGTTGGCAACGATACAATGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGAGGCCGTCGCCGCGACATTCGTCGGGACATTCTGATGAGAGGGTGAACAATGGTATGCCTAACAATAATAACCCTACTACAATGTCACAGCCTCAGGGAAGAAATTCTTCATTTGGTTGA 1095 52.24 MFHATKKPSSMSSHERPMCVQGDSGLVLTTDPKPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQAIKDGMRASALELQRNSGSSSTLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMSAATAAATGPFKTTSNNIGTTTNLVSDAAIKDFISPPPPHSFPPFQDINNVLFTSEAPPPPPLIDCLKKPSPFISGAGKNPIFWPDDLRLQDLGTPPATLAPPPPSIGGPADLDTLQLEMYETKPPPPQPLLAVGNDTMNEKKFDVSLKLERPSPRHSSGHSDERVNNGMPNNNNPTTMSQPQGRNSSFG 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4195205 4198795 - Tan0006387.1 Tan05g0577 751885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0577 364 MobiDBLite consensus disorder prediction 1 26 - -
Tan05g0577 364 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Tan05g0577 364 MobiDBLite consensus disorder prediction 298 364 - -
Tan05g0577 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Tan05g0577 364 Gene3D - 32 90 - -
Tan05g0577 364 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Tan05g0577 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 187 IPR046955 GO:0003700(InterPro)
Tan05g0577 364 MobiDBLite consensus disorder prediction 316 337 - -
Tan05g0577 364 FunFam Myb family transcription factor 32 90 - -
Tan05g0577 364 MobiDBLite consensus disorder prediction 1 17 - -
Tan05g0577 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Tan05g0577 364 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Tan05g0577 364 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0015 Tan-Chr2:571209 Tan05g0577 Tan-Chr5:4195205 1.60E-82 dispersed
Tan02g0016 Tan-Chr2:571209 Tan05g0577 Tan-Chr5:4195205 3.70E-53 dispersed
Tan05g0577 Tan-Chr5:4195205 Tan10g0520 Tan-Chr10:4152978 1.50E-40 dispersed
Tan05g0577 Tan-Chr5:4195205 Tan05g0578 Tan-Chr5:4195205 5.70E-136 tandem
Tan07g2044 Tan-Chr7:71999665 Tan05g0577 Tan-Chr5:4195205 1.30E-29 transposed
Tan07g2179 Tan-Chr7:73328062 Tan05g0577 Tan-Chr5:4195205 2.10E-22 transposed
Tan08g1372 Tan-Chr8:54544996 Tan05g0577 Tan-Chr5:4195205 6.90E-26 transposed
Tan02g0014 Tan-Chr2:571209 Tan05g0577 Tan-Chr5:4195205 5.90E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27418 PF00249 Myb_DNA-binding 4.30E-06 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0577 - - - 0.0