Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0579 ATGACTATGATCGTCGCTGCAAGAGCAATCGCAACAACTCGATCAGTGGTGCGATTGAGCAGGCTCCCTCTTCTATCCCCATCTTCTTACGTTTTTGCCGCGCAGAAATCTCACTCTCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGTATCGCTGCTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGCGGGAAGTGGATCGATGCTTATGATGGGAAGACCATTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCGATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGTAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAGCTGATAACCTTAGAGCAAGGCAAACCATTAAAGGAAGCAGTGGGTGAGATTAACTATGGAGCCAGCTTTATTGAATTCTTTTCTGAGGAAGCAAAACGAGTATATGGCGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTTGTTTTGAAGCAGCCAGTTGGAGTTGTTGGTATTATTACTCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTAGTCATAAAACCCTCTGAACTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATCCCCCCAGGTGTAGTGAATGTGGTAATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCCCAGGTAAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGGAAAAAATTGATGGCCGGAGCTGCTGGGACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCACCGTGCATAGTCTTTGATGACGCAGATGTGGATGTTGCTGTAAAAGGAGCTATTGCTGCGAAGTTTCGAAATAGTGGGCAGACTTGTGTCTGTGCCAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTAGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCATCACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTCGGGATGACATTTTTTGAACCTACAGTCGTTACTGACGTGAAGAGTGATATGCTTTTATCCAGGGAGGAAGTATTCGGTCCCGTGGCACCCTTACTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTTGGTCGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTCTGTTTGGGAAATATGGGCCAAAACTGA 1626 45.14 MTMIVAARAIATTRSVVRLSRLPLLSPSSYVFAAQKSHSHTLLIRQMSSEAQSIAARLHSSGLLRSQGLIGGKWIDAYDGKTIKVHNPANGEVITDVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGEINYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGIITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSNAFSKAVQNLQVGDGFSEGVAQGPLINEAAVQKVEKFLQDAITKGAKVLLGGKRHSLGMTFFEPTVVTDVKSDMLLSREEVFGPVAPLLPFKTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMGQN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4204377 4219778 - Tan0015241.1 Tan05g0579 751887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0579 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491(InterPro)
Tan05g0579 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Tan05g0579 541 NCBIfam succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Tan05g0579 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491(InterPro)
Tan05g0579 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 538 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Tan05g0579 541 FunFam Succinate-semialdehyde dehydrogenase I 313 502 - -
Tan05g0579 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491(InterPro)
Tan05g0579 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620(InterPro)
Tan05g0579 541 SUPERFAMILY ALDH-like 46 536 IPR016161 GO:0016491(InterPro)
Tan05g0579 541 FunFam Aldehyde dehydrogenase, putative 505 531 - -
Tan05g0579 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Tan05g0579 541 FunFam Succinate-semialdehyde dehydrogenase I 80 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0579 K17761 - - csv:101217352 957.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0579 Tan-Chr5:4204377 Tan09g1303 Tan-Chr9:65254879 3.00E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1303 . 51 552 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 1.8e-217 752.7
Tan02g2878 . 26 510 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 6.6e-159 558.1
Tan02g2877 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 6.6e-159 558.1
Tan09g2233 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 2.6e-155 546.2
Tan09g2233 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 78.4 1.4e-255 879.4
Tan02g2877 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 1.5e-246 849.4
Tan02g2878 . 12 510 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 6.7e-242 833.9
Tan09g1303 . 59 552 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 2.1e-166 583.2
Tan02g2877 . 1 376 Aldehyde Dehydrogenase Gene Family AT1G23800 77.0 6.8e-170 594.3
Tan09g2233 . 1 400 Aldehyde Dehydrogenase Gene Family AT1G23800 71.5 2.7e-166 582.4
Tan02g2878 . 1 354 Aldehyde Dehydrogenase Gene Family AT1G23800 78.3 3.5e-166 582.0
Tan09g1303 . 68 396 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 8.4e-104 374.8
Tan01g4041 . 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 1.5e-185 646.7
Tan01g4042 . 12 485 Aldehyde Dehydrogenase Gene Family AT4G34240 65.4 2.9e-181 632.5
Tan01g1285 . 54 449 Aldehyde Dehydrogenase Gene Family AT4G34240 51.3 1.6e-110 397.5
Tan01g4041 . 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 1.1e-180 630.2
Tan01g4042 . 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 1.1e-180 630.2
Tan01g1284 . 110 524 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 8.1e-118 421.4
Tan07g0743 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.8 5.8e-116 415.2
Tan01g1285 . 110 449 Aldehyde Dehydrogenase Gene Family AT1G44170 52.4 8.7e-96 348.2
Tan01g1284 . 50 526 Aldehyde Dehydrogenase Gene Family AT4G36250 63.9 4.7e-186 648.3
Tan07g0743 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 1.6e-157 553.5
Tan01g1285 . 50 451 Aldehyde Dehydrogenase Gene Family AT4G36250 62.9 5.8e-152 535.0
Tan05g0579 . 37 541 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 2.0e-235 812.4
Tan02g1130 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 8.2e-241 830.5
Tan02g1131 . 1 396 Aldehyde Dehydrogenase Gene Family AT2G14170 84.1 1.3e-198 690.3
Tan03g1777 . 196 662 Aldehyde Dehydrogenase Gene Family AT2G14170 65.7 7.8e-183 637.9
Tan09g2198 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 3.8e-252 867.8
Tan09g2198 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 1.7e-255 879.0
Tan08g0366 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.6 2.3e-268 921.8
Tan08g0365 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.5 1.1e-267 919.5
Tan05g2088 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.0 1.9e-260 895.6
Tan06g2750 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 77.1 2.2e-278 955.3
Tan06g2751 . 1 433 Aldehyde Dehydrogenase Gene Family AT3G66658 78.1 3.0e-203 705.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42