Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0580 ATGAGTTCGAACACCGCGTCTAGCTCCGGAGGTCCGGGATCGAACGATTCATCATCTAATAGAAGGAATTCGAAACGCCCTAAATATTCGAGGTTTACCCAGCAGGAGCTTCCAGCGTGTAAACCCATTCTCACACCAAGATGGGTGATTTCCGCATTCATGTTAGTTAGCATTATCTTTGTTCCCATTGGAGTTGCTTCCTTGTTTGCTTCCAGAGATGTGGTTGAAATAATCGATCGTTATGAAACTGAGTGTATACCAGCAGGATTTAGAAACGACAAGGTTGGGTTCATACAGGGCCCTGCAAGTAAAAATTGCAGCAGAAAGATAACTGTCCCGAAACGTATGAAGCAACCAATTTATGTCTATTACCAGCTTGACAATTTCTATCAGAATCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATGCTGGAAGTGAGCGTGATACGGGCTCTTGCAAGCCTGAAGACAACGTGAACGGGCTGCCAATCGTTCCCTGTGGTTTAATAGCTTGGAGTTTGTTTAATGATACTTATAACTTCACCCTTAACAACAAAGAAGTGGCTGTGAACAAGCTTGGTATCTCGTGGAAGAGTGATCGGGAACACAAATTTGGCAAGAATGTATTTCCCAAAAATTTTCAGAATGGTACTCTGAAAGGTGGGAAAACCCTTGATGCAACCAAACCATTGAGTCAACAAGAGGATCTTATTGTGTGGATGCGGACTGCTGCTCTTCCCACATTTAGAAAGTTGTATGGAAAGATAGAGGTCGATCTTGAGAAGGATGATGTAATAGTCGTGAATTTGGAGAACAATTACAACACGTACAGTTTTAACGGCAAGAAAAAGCTTGTGCTTTCTACAACTAGCTGGCTTGGTGGGAAGAATGACTTTCTCGGTATTGCTTATCTTACTGTTGGTGGGCTATGCTTCTTTTTGGCAATGTCTTTCACAGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCATCATATCTGTCATGGAATAGAGACCCAAGTGGGCACTGA 1047 43.36 MSSNTASSSGGPGSNDSSSNRRNSKRPKYSRFTQQELPACKPILTPRWVISAFMLVSIIFVPIGVASLFASRDVVEIIDRYETECIPAGFRNDKVGFIQGPASKNCSRKITVPKRMKQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDAGSERDTGSCKPEDNVNGLPIVPCGLIAWSLFNDTYNFTLNNKEVAVNKLGISWKSDREHKFGKNVFPKNFQNGTLKGGKTLDATKPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEKDDVIVVNLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLAMSFTVVYLVKPRRLGDPSYLSWNRDPSGH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4232166 4235056 + Tan0003691.1 Tan05g0580 751888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0580 348 MobiDBLite consensus disorder prediction 1 31 - -
Tan05g0580 348 PANTHER CELL CYCLE CONTROL PROTEIN 50 17 340 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Tan05g0580 348 MobiDBLite consensus disorder prediction 1 20 - -
Tan05g0580 348 PIRSF Lem3/Cdc50 1 344 IPR005045 GO:0016020(InterPro)
Tan05g0580 348 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 68 332 IPR005045 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2723 Tan-Chr3:80178731 Tan05g0580 Tan-Chr5:4232166 1.90E-112 dispersed
Tan03g2724 Tan-Chr3:80178731 Tan05g0580 Tan-Chr5:4232166 1.90E-112 dispersed
Tan04g2181 Tan-Chr4:78054680 Tan05g0580 Tan-Chr5:4232166 1.40E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0580 K26935 - csv:101216400 620.542