Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0584 ATGGCCTTCTCATCCTCCTTCGCTGGATCTGCCGTTTCTTATTCTCTGATCGAGGCCTCTCGTTCTGAGTTGTCGCCGTCCGACTGCCGGAAGGGGAGCTCTTTGAAGCTTCAATCTGGCATTTTTGGAACTACTATCTCGTGTGGGGCGTCTTCTTTACAGTCAAGGTCATCTAAAAATCGGACTATCCAACCCATTGAAGCTACGGCCACTGAGGCACCTCCGACGTTCCAAAAAACTCCTAGCGGTGGGAAGACCAAGATTGGAATCAATGGTTTTGGACGAATTGGAAGACTGGTCTTACGAATTGCAACCTTCAGGGATGATATTGATGTTGTAGCAGTTAATGACCCATTTGTTGATGCTAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGTATTTTCAATGGAACCATCAAGGTTCTTAATGACTCAACCTTGGAAATTAATGGGAAGCAGATTAAAGTTGTAAGCAAAAGGGACCCTGTAGAGATCCCTTGGGGTGATTATGGAGCTGAATACGTTGTTGAGTCCTCTGGAGTTTTCACTACAAAAGAGAAGGCTTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAACGAAAAAACTTACAAGCCTACAATGGATATTGTCTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACTACAGTGCATGCAACGACAGCAACACAAAAAACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCGAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACCCCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGGGCTTCATATGAAGATGTGAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCAAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGCACCTCATTCGTGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCACTCGAGTCCTGGACCTTATTGAGCACATGGCATTGGTTTCAGCCTTGAACTAA 1266 44.55 MAFSSSFAGSAVSYSLIEASRSELSPSDCRKGSSLKLQSGIFGTTISCGASSLQSRSSKNRTIQPIEATATEAPPTFQKTPSGGKTKIGINGFGRIGRLVLRIATFRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGIFNGTIKVLNDSTLEINGKQIKVVSKRDPVEIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKRASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSTRVLDLIEHMALVSALN 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4247181 4251810 - Tan0019387.1 Tan05g0584 751892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0584 421 SMART gp_dh_n_7 86 235 IPR020828 GO:0051287(InterPro)
Tan05g0584 421 FunFam Glyceraldehyde-3-phosphate dehydrogenase 86 245 - -
Tan05g0584 421 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 234 397 - -
Tan05g0584 421 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 87 409 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Tan05g0584 421 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 87 188 IPR020828 GO:0051287(InterPro)
Tan05g0584 421 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 233 240 IPR020830 GO:0016620(InterPro)
Tan05g0584 421 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 240 397 IPR020829 GO:0016620(InterPro)
Tan05g0584 421 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 82 416 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 FunFam Glyceraldehyde-3-phosphate dehydrogenase 234 399 - -
Tan05g0584 421 Gene3D Dihydrodipicolinate Reductase; domain 2 235 401 - -
Tan05g0584 421 Gene3D - 87 414 - -
Tan05g0584 421 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 229 247 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 194 207 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 353 368 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 256 272 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 313 330 IPR020831 GO:0016620(InterPro)
Tan05g0584 421 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 255 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0031 Tan-Chr2:628867 Tan05g0584 Tan-Chr5:4247181 1.10E-153 dispersed
Tan02g0032 Tan-Chr2:628867 Tan05g0584 Tan-Chr5:4247181 1.10E-153 dispersed
Tan02g0033 Tan-Chr2:628867 Tan05g0584 Tan-Chr5:4247181 7.90E-168 dispersed
Tan05g0584 Tan-Chr5:4247181 Tan05g2926 Tan-Chr5:81452860 1.80E-141 dispersed
Tan06g1862 Tan-Chr6:46277967 Tan05g0584 Tan-Chr5:4247181 5.50E-08 transposed
Tan07g0017 Tan-Chr7:2141233 Tan05g0584 Tan-Chr5:4247181 7.80E-86 transposed
Tan11g0196 Tan-Chr11:1645964 Tan05g0584 Tan-Chr5:4247181 8.10E-145 transposed
Tan02g0028 Tan-Chr2:628867 Tan05g0584 Tan-Chr5:4247181 1.90E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0584 K00134 - csv:101203472 763.451