Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0598 | ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTTAAGACTCTAACCGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATCGATCGTATCAAGGAGCGGGTCGAGGAGAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCACTGAGGGGTGGTGGTTACCTGTAA | 468 | 46.79 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGYL | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4340292 | 4343410 | - | Tan0017124.1 | Tan05g0598 | 751906 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0598 | 155 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515(InterPro) | |
| Tan05g0598 | 155 | Pfam | Ubiquitin family | 79 | 149 | IPR000626 | GO:0005515(InterPro) | |
| Tan05g0598 | 155 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Tan05g0598 | 155 | ProSitePatterns | Ubiquitin domain signature. | 103 | 128 | IPR019954 | - | |
| Tan05g0598 | 155 | SUPERFAMILY | Ubiquitin-like | 79 | 153 | IPR029071 | - | |
| Tan05g0598 | 155 | PANTHER | UBIQUITIN | 1 | 76 | IPR050158 | GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER) | |
| Tan05g0598 | 155 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515(InterPro) | |
| Tan05g0598 | 155 | SMART | ubq_7 | 77 | 148 | IPR000626 | GO:0005515(InterPro) | |
| Tan05g0598 | 155 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515(InterPro) | |
| Tan05g0598 | 155 | FunFam | NEDD8 protein | 77 | 154 | - | - | |
| Tan05g0598 | 155 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Tan05g0598 | 155 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Tan05g0598 | 155 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Tan05g0598 | 155 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Tan05g0598 | 155 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Tan05g0598 | 155 | CDD | Ubl_NEDD8 | 79 | 152 | IPR038738 | - | |
| Tan05g0598 | 155 | Gene3D | - | 78 | 154 | - | - | |
| Tan05g0598 | 155 | Gene3D | - | 1 | 77 | - | - | |
| Tan05g0598 | 155 | FunFam | Polyubiquitin 3 | 1 | 76 | - | - | |
| Tan05g0598 | 155 | ProSiteProfiles | Ubiquitin domain profile. | 77 | 152 | IPR000626 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g0322 | Tan-Chr2:2663397 | Tan05g0598 | Tan-Chr5:4340292 | 1.70E-11 | dispersed | |
| Tan03g2341 | Tan-Chr3:77370919 | Tan05g0598 | Tan-Chr5:4340292 | 1.40E-07 | dispersed | |
| Tan04g1254 | Tan-Chr4:11862762 | Tan05g0598 | Tan-Chr5:4340292 | 2.20E-36 | dispersed | |
| Tan05g0598 | Tan-Chr5:4340292 | Tan05g3124 | Tan-Chr5:83344539 | 3.20E-64 | dispersed | |
| Tan05g0598 | Tan-Chr5:4340292 | Tan03g2339 | Tan-Chr3:77366093 | 3.20E-64 | transposed | |
| Tan05g0598 | Tan-Chr5:4340292 | Tan05g3123 | Tan-Chr5:83344539 | 3.20E-64 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0598 | K12158 | - | vvi:100241051 | 290.812 |