Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0608 ATGAAGGAGAGTGGAAGAAAACAAGGCACTCTTTCACCGTGTGCAGCTTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGATTGCGTTTTCGCTCCTTATTTTCCCGCCGACGAGCCTCATAAATTCGCCAGCGTTCACAAAGTCTTCGGAGCTAGTAATGTCAATAAGATGTTACAGGAGTTACCCGAGCACCAACGAAGTGATGCAGTGAGCTCGATGGTTTATGAGGCGAACGCGAGAGTGCGAGATCCAGTGTATGGATGTGTCGGAGCTATATCGTCGTTGCAACAGCAAATCGATCTCTTGCAAACCCAGCTAGCGATTGCACAAGCAGAGGTGGTACACATGCGAATGCGTCAATTCCCGTCGTCGTCCAACCCGACCACCGGACACTCGCCGGAAACTGCCTCGCCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 513 51.66 MKESGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSNPTTGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4443176 4445660 - Tan0008848.1 Tan05g0608 751916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0608 170 Coils Coil 92 112 - -
Tan05g0608 170 MobiDBLite consensus disorder prediction 121 143 - -
Tan05g0608 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 135 - -
Tan05g0608 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Tan05g0608 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1404 Tan-Chr4:15936011 Tan05g0608 Tan-Chr5:4443176 1.30E-40 dispersed
Tan05g0608 Tan-Chr5:4443176 Tan11g0319 Tan-Chr11:2505729 7.90E-40 dispersed
Tan04g0361 Tan-Chr4:3031219 Tan05g0608 Tan-Chr5:4443176 2.40E-29 transposed
Tan04g1350 Tan-Chr4:14554010 Tan05g0608 Tan-Chr5:4443176 3.00E-44 transposed
Tan05g0519 Tan-Chr5:3585649 Tan05g0608 Tan-Chr5:4443176 4.30E-43 transposed
Tan05g2776 Tan-Chr5:79905354 Tan05g0608 Tan-Chr5:4443176 1.10E-60 transposed
Tan02g0063 Tan-Chr2:823586 Tan05g0608 Tan-Chr5:4443176 1.80E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27421 PF03195 LOB 8.50E-44 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0608 - - - 0.0