Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0616 | ATGGTGAAGTTTACAGTCGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAACATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGACTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAGGAAGTTGCTGGTGATGTGCGGATGACAGATACCCGTGCAGATGAGGCAGAGCGAGGTATCACCATCAAATCTACTGGTATCTCCCTCTATTATGAGATGACTGAGGAGTCATTGAAAAATTATAAGGGGGAGAGGCAGGGAAATGAGTATCTTATCAACCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACTGCTGCTCTACGAATTACTGATGGTGCCCTTGTGGTGGTGGATTGTGTTGAGGGTGTTTGTGTCCAAACAGAGACAGTGCTCCGTCAGGCCTTGGGTGAGAGGATTCGACCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGTGAAGAGGCTTACCAGACATTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAGGATCCACTTCTTGGAGATGTGCAAGTGTACCCTGAAAAGGGAACAGTTGCTTTCTCTGCCGGTTTGCATGGTTGGGCTTTCACCCTGACCAACTTCGCAAAGATGTATGCCTCTAAATTTGGAGTAGATGAGTCAAAGATGATGGAGAGGCTTTGGGGTGAGAACTTCTTCGACCCTTCCACCAAGAAATGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTAATACTTGCATGATTGACCAGAAGGATAAGCTATGGCCTATGTTGCAGAAGCTTGGAGTTGTCATGAAGGCGGAAGAGAAGGATCTGATGGGTAAAGCATTGATGAAGCGAGTTATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCACCTTCCACGGCACAAAAGTACCGTGTTGAGAACTTGTACGAGGGTCCACTAGATGATGCTTATGCTAGTGCCATCAGAAGTTGTGACCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCAGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTCTCCGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTATGTTCCTGGTGAGAAGAAAGACTTGTATGTTAAGAGTGTCCAGAGAACTGTTATTTGGATGGGGAAGAAGCAAGAGACAGTGGAGGATGTGCCTTGTGGTAATACTGTTGCTATGGTTGGCTTGGACCAATTTATCACCAAGAATGCCACTCTTACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCTATGAAATTTTCTGTATCCCCTGTGGTTCGTGTTGCAGTTCAGTGCAAGGTGGCCTCTGACCTTCCCAAGCTAGTGGAAGGCCTTAAACGTCTTGCAAAGTCGGACCCTATGGTTGTCTGTACGATGGAGGAATCTGGTGAACACATCGTTGCTGGTGCAGGAGAACTTCACCTGGAGATCTGTTTGAAGGATTTGCAAGACGACTTCATGGGAGGAGCTGAGATCATTAAATCTGATCCTGTTGTCTCTTTCCGTGAAACCGTCCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAGCACAATCGTCTGTACATGGAAGCACGACCCTTGGAGGAGGGACTACCAGAGTCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTCGTTCTAAGATTCTATCAGAGGAGTATGGTTGGGACAAAGATCTTGCCAAGAAGATCTGGTGCTTTGGGCCGGAGACTACAGGGCCTAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCCGTGGTTGCTGGTTTCCAATGGGCATCGAAAGAAGGTGCACTGGCTGAAGAAAACATGAGAGGCATTTGTTTTGAAGTCTGTGATGTTGTTCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCCACTGCCAGGAGGGTAATTTACGCTTCCCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTATACCTTGTGGAAATTCAGGCTCCGGAGCAAGCTCTGGGAGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACATGTCTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAAGCATATCTCCCCGTCATTGAGTCGTTCGGTTTCTCGAGCACTCTGAGAGCTGCAACTTCCGGCCAGGCTTTCCCACAGTGTGTGTTTGACCATTGGGACATGATGTCTTCAGATCCATTGGAATCTGGCTCCCAAGCTGCGGTGTTGGTTGCTGATATCAGGAAGAGGAAGGGATTGAAGGAGCAGATGACTCCATTGTCTGAGTTTGAAGACAAGCTTTAA | 2532 | 46.6 | MVKFTVEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTEESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPSTKKWTSKNTGSPTCKRGFVQFCYEPIKQIINTCMIDQKDKLWPMLQKLGVVMKAEEKDLMGKALMKRVMQTWLPASNALLEMMIFHLPSPSTAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEGLPESIDDGRIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAVLVADIRKRKGLKEQMTPLSEFEDKL | 843 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4542076 | 4546024 | + | Tan0000689.1 | Tan05g0616 | 751924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0616 | 843 | SUPERFAMILY | Translation proteins | 342 | 476 | IPR009000 | - | |
| Tan05g0616 | 843 | Gene3D | Translation factors | 343 | 484 | - | - | |
| Tan05g0616 | 843 | Gene3D | - | 3 | 237 | IPR027417 | - | |
| Tan05g0616 | 843 | CDD | EF2 | 20 | 230 | - | - | |
| Tan05g0616 | 843 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 486 | 563 | - | - | |
| Tan05g0616 | 843 | FunFam | Translation elongation factor 2 | 3 | 237 | - | - | |
| Tan05g0616 | 843 | CDD | EF2_snRNP_III | 487 | 559 | - | - | |
| Tan05g0616 | 843 | SUPERFAMILY | EF-G C-terminal domain-like | 727 | 838 | IPR035647 | - | |
| Tan05g0616 | 843 | Gene3D | - | 723 | 843 | - | - | |
| Tan05g0616 | 843 | Pfam | Elongation Factor G, domain III | 487 | 549 | IPR041095 | - | |
| Tan05g0616 | 843 | Pfam | Elongation factor G C-terminus | 724 | 811 | IPR000640 | - | |
| Tan05g0616 | 843 | SMART | EFG_C_a | 724 | 813 | IPR000640 | - | |
| Tan05g0616 | 843 | SMART | EFG_IV_2 | 606 | 722 | IPR005517 | GO:0005525(InterPro) | |
| Tan05g0616 | 843 | CDD | aeEF2_snRNP_like_IV | 559 | 731 | - | - | |
| Tan05g0616 | 843 | Pfam | Elongation factor Tu domain 2 | 394 | 462 | IPR004161 | GO:0005525(InterPro) | |
| Tan05g0616 | 843 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 562 | 726 | IPR020568 | - | |
| Tan05g0616 | 843 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 4 | 842 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
| Tan05g0616 | 843 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 58 | 73 | IPR031157 | - | |
| Tan05g0616 | 843 | FunFam | Translation elongation factor 2 | 569 | 722 | - | - | |
| Tan05g0616 | 843 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 17 | 344 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | FunFam | Translation elongation factor 2 | 723 | 843 | - | - | |
| Tan05g0616 | 843 | SUPERFAMILY | EF-G C-terminal domain-like | 484 | 560 | IPR035647 | - | |
| Tan05g0616 | 843 | FunFam | Translation elongation factor 2 | 343 | 484 | - | - | |
| Tan05g0616 | 843 | PRINTS | GTP-binding elongation factor signature | 65 | 73 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | PRINTS | GTP-binding elongation factor signature | 153 | 162 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | PRINTS | GTP-binding elongation factor signature | 101 | 111 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | PRINTS | GTP-binding elongation factor signature | 117 | 128 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | PRINTS | GTP-binding elongation factor signature | 21 | 34 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan05g0616 | 843 | Pfam | Elongation factor G, domain IV | 610 | 722 | IPR005517 | GO:0005525(InterPro) | |
| Tan05g0616 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 341 | IPR027417 | - | |
| Tan05g0616 | 843 | FunFam | Translation elongation factor 2 | 486 | 563 | - | - | |
| Tan05g0616 | 843 | Gene3D | - | 570 | 722 | IPR014721 | - | |
| Tan05g0616 | 843 | NCBIfam | small GTP-binding protein domain | 20 | 176 | IPR005225 | GO:0005525(InterPro) | |
| Tan05g0616 | 843 | CDD | EF2_II | 375 | 470 | - | - | |
| Tan05g0616 | 843 | FunFam | Elongation factor 2 | 222 | 326 | - | - | |
| Tan05g0616 | 843 | CDD | eEF2_snRNP_like_C | 727 | 805 | - | - | |
| Tan05g0616 | 843 | Pfam | Elongation factor Tu GTP binding domain | 18 | 221 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g0616 | Tan-Chr5:4542076 | Tan05g0640 | Tan-Chr5:4774988 | 0.00E+00 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0616 | K03234 | - | gmx:100804251 | 1637.47 |