Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0625 ATGTCAAATGAAGATCATCAGAAGGATCCTTATTACCCACAATTTGATCCTTTCACTCAAAACTTCCATCATCACAAACCCTTTGAAGAAGCTCCTCCTTTGACAAGTCCTTATGATGCTTTTGATCCCTCTTCTGTGGGGTTCTTCTCTGATTTCTTACATGCCTCAGCTGATTATGACTACAACAACATCCTCTCCGCTCGCCTCGACATGTCGTGCTCGTCGTCCGAAGTTATTTCTCCGATCGACGATGCTTCGAAGAAGTCCTCAGGCTTTGGAGATCAGTCGGTGGTGACCGGTGAGCACCCGTCGACAGCGAATTCCTCGACTACGTCTTCGTCCGACGAGGCTGCGGCGGGCGGCGGTGGTGATTCTGCCAAGAGTGGAGAGGTGAAAGAGTTTGATGATAAAAATGGAGAAAATGGCAAGAAAGTGAATAGAGGAAAAAAAAAGGAGATCAAAAGAGAAAAAGGGCCACGATTCGCCTTCTTGACCAAGACTGAAATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTAAAAAACAGCCCTTTTCCAAGAAGTTATTACAAATGCACAACTCAAAATTGCAATGTGAAAAAGCGAGTAGAAAGATCATCGGAAGATCCATGTTTTGTTGTAACAACATACGAAGGAAAACACAACCACTATTGTCCGATAACACTTCGAGGCCCCAATGCTACCGGAGTGTCGTTGCCTTTATCGGGTTCACCGGGATTAGCTCCGGCGAACTTCTTCTCCGGCGAGGTGTATGAAGGGGTTGATCTGCAGCAACAATATTATCAGGTTCCTGATTATGGGCTGTTGCAAGATTTGATTAATCCATCATTTAATCGAAAGCAAGAGCCATGA 891 44.56 MSNEDHQKDPYYPQFDPFTQNFHHHKPFEEAPPLTSPYDAFDPSSVGFFSDFLHASADYDYNNILSARLDMSCSSSEVISPIDDASKKSSGFGDQSVVTGEHPSTANSSTTSSSDEAAAGGGGDSAKSGEVKEFDDKNGENGKKVNRGKKKEIKREKGPRFAFLTKTEIDHLEDGYRWRKYGQKAVKNSPFPRSYYKCTTQNCNVKKRVERSSEDPCFVVTTYEGKHNHYCPITLRGPNATGVSLPLSGSPGLAPANFFSGEVYEGVDLQQQYYQVPDYGLLQDLINPSFNRKQEP 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4648497 4650816 - Tan0006465.1 Tan05g0625 751933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0625 296 MobiDBLite consensus disorder prediction 128 147 - -
Tan05g0625 296 MobiDBLite consensus disorder prediction 1 36 - -
Tan05g0625 296 SUPERFAMILY WRKY DNA-binding domain 165 232 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0625 296 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0625 296 SMART WRKY_cls 172 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0625 296 MobiDBLite consensus disorder prediction 83 118 - -
Tan05g0625 296 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 236 IPR044810 GO:0003700(InterPro)
Tan05g0625 296 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0625 296 Gene3D WRKY domain 159 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0625 296 FunFam WRKY transcription factor 57 158 232 - -
Tan05g0625 296 MobiDBLite consensus disorder prediction 83 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2664 Tan-Chr3:79696956 Tan05g0625 Tan-Chr5:4648497 3.10E-38 dispersed
Tan05g0625 Tan-Chr5:4648497 Tan06g2778 Tan-Chr6:79967303 5.40E-36 dispersed
Tan02g0079 Tan-Chr2:933675 Tan05g0625 Tan-Chr5:4648497 4.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27425 PF03106 WRKY 5.00E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0625 - - - 0.0