Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0636 ATGGGAAGAGGTAAGATCGAAATTAAACGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATACGCCAATAATAGTGTGAGAGGAACGATTGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCGGGATTATCAGTTGCAGAAGCTAATGTACAGTTTTACCAGCAAGAAGCCTCGAAGCTGAAGAGACAGATCAGAGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTTAGCTCATTGTCATTAAAGGATTTGAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAACGAAACTTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGGAAATGGAGCTTCAAAACCACAACAACTATCTGCGAGCACAGATTGCTGAACATGAAAGAATACAACAGCAGCAGCAACAACAAACAAACATGATGCAAAGAGCAACCTTCGAGACAGTGCAGGGAGCTGGGCATTACGATGAAAACAGAAGTTATGGGGCTGTCGGGCTAATGGATTCCGACACCCATTACGCCCATCAAGATCATCTCACTGCCCTTCAACTTGTCTAG 702 42.02 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQTNMMQRATFETVQGAGHYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4727046 4736941 - Tan0003246.1 Tan05g0636 751944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0636 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 Coils Coil 81 108 - -
Tan05g0636 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan05g0636 233 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Tan05g0636 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan05g0636 233 Coils Coil 125 145 - -
Tan05g0636 233 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan05g0636 233 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan05g0636 233 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0636 Tan-Chr5:4727046 Tan10g2028 Tan-Chr10:64501337 1.00E-66 dispersed
Tan05g0636 Tan-Chr5:4727046 Tan03g2620 Tan-Chr3:79270654 2.40E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27426 PF01486 K-box 3.10E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0636 K09264 - csv:101217987 395.586