Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0679 ATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCGACCGTCCAGCCAGAAAATCCTCTCAAAGAGATCCGATACAGAGGCGTTCGAAAGCGTCCTTGGGGCAGATACGCCGCTGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGATTCCGCTGAAGAGGCCGCTCGTGCTTACGATACTGCCGCTCGGTCCCTCCGTGGAGCCAAGGCTAAAACAAACTTCCCTTTACATCCATCGACAATTTCGATTCAGCAACCAATTCCGTTTTACCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATTGAGTGTGTTCAGGCTAATAGACCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCTTTTAGTGGCCCGCGGATTTCTAACCCTTTGTCGTCGCTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCAGACGACTGCCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGGCTTGCCGTTCGATCTTAACTTACCGCCTCCGATGGACGTCGTGGATTTAACCGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 657 52.66 MRRGRPSDPFTATEVPKSTVQPENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRGLPFDLNLPPPMDVVDLTGDDLQATALCL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4924897 4926973 - Tan0017102.1 Tan05g0679 751987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0679 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 MobiDBLite consensus disorder prediction 148 173 - -
Tan05g0679 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677(InterPro)
Tan05g0679 218 CDD AP2 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 SMART rav1_2 30 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 MobiDBLite consensus disorder prediction 1 27 - -
Tan05g0679 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Tan05g0679 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0679 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2117 Tan-Chr2:90660974 Tan05g0679 Tan-Chr5:4924897 1.40E-22 dispersed
Tan05g0679 Tan-Chr5:4924897 Tan05g2453 Tan-Chr5:75675136 6.80E-28 dispersed
Tan01g1742 Tan-Chr1:18603400 Tan05g0679 Tan-Chr5:4924897 4.60E-53 transposed
Tan02g0130 Tan-Chr2:1217897 Tan05g0679 Tan-Chr5:4924897 1.20E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27428 PF00847 AP2 8.20E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0679 K09286 - csv:101221703 386.726