Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0684 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATTTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCTGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGGCAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACCGGATCGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATATTACCTCAAGTTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCTTAGCTGCTCAAGACTGGAGCACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGGCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAATGCTACCTGATCGACCTGATCAACCGGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCAGCAATGAATGCGCTTGGGCTTCCTTCAAGACCTGTAAGTAACTTAACTAATCATACAAAAACGTTGCAAATACATTTATTCTTCTTCTCCCTTTACATCAGAAAAGGAATCATGAACTATTTCTATTACAATGGATTGTGA 1068 43.16 MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNILPQVRPGALGSAGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGALAAQDWSTYVGNVSPVLPNLGYNSGNLEESYSNGQLALSTSTPMLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSAMNALGLPSRPVSNLTNHTKTLQIHLFFFSLYIRKGIMNYFYYNGL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4944075 4947986 - Tan0002376.5 Tan05g0684 751992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0684 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872(InterPro)
Tan05g0684 355 PANTHER PROTEIN PHOSPHATASE RELATED 16 329 IPR050974 GO:0003729(PANTHER)
Tan05g0684 355 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872(InterPro)
Tan05g0684 355 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872(InterPro)
Tan05g0684 355 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 SMART c3hfinal6 135 160 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 SMART c3hfinal6 276 303 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Tan05g0684 355 Gene3D - 122 170 - -
Tan05g0684 355 Gene3D - 267 322 - -
Tan05g0684 355 Gene3D - 44 121 - -
Tan05g0684 355 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0684 Tan-Chr5:4944075 Tan05g0686 Tan-Chr5:4944075 1.10E-96 dispersed
Tan05g0683 Tan-Chr5:4944075 Tan05g0684 Tan-Chr5:4944075 4.60E-103 tandem
Tan05g0684 Tan-Chr5:4944075 Tan05g0685 Tan-Chr5:4944075 8.10E-103 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27433 PF00642 zf-CCCH 3.40E-10 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0684 - - - 0.0