Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0684 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATTTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCTGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGGCAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACCGGATCGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATATTACCTCAAGTTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCTTAGCTGCTCAAGACTGGAGCACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGGCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAATGCTACCTGATCGACCTGATCAACCGGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCAGCAATGAATGCGCTTGGGCTTCCTTCAAGACCTGTAAGTAACTTAACTAATCATACAAAAACGTTGCAAATACATTTATTCTTCTTCTCCCTTTACATCAGAAAAGGAATCATGAACTATTTCTATTACAATGGATTGTGA | 1068 | 43.16 | MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNILPQVRPGALGSAGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGALAAQDWSTYVGNVSPVLPNLGYNSGNLEESYSNGQLALSTSTPMLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSAMNALGLPSRPVSNLTNHTKTLQIHLFFFSLYIRKGIMNYFYYNGL | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4944075 | 4947986 | - | Tan0002376.5 | Tan05g0684 | 751992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0684 | 355 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 329 | IPR050974 | GO:0003729(PANTHER) | |
Tan05g0684 | 355 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
Tan05g0684 | 355 | Gene3D | - | 122 | 170 | - | - | |
Tan05g0684 | 355 | Gene3D | - | 267 | 322 | - | - | |
Tan05g0684 | 355 | Gene3D | - | 44 | 121 | - | - | |
Tan05g0684 | 355 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g0684 | Tan-Chr5:4944075 | Tan05g0686 | Tan-Chr5:4944075 | 1.10E-96 | dispersed | |
Tan05g0683 | Tan-Chr5:4944075 | Tan05g0684 | Tan-Chr5:4944075 | 4.60E-103 | tandem | |
Tan05g0684 | Tan-Chr5:4944075 | Tan05g0685 | Tan-Chr5:4944075 | 8.10E-103 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27433 | PF00642 | zf-CCCH | 3.40E-10 | CL0537 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0684 | - | - | - | 0.0 |