Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0689 ATGAAATTCGAAGAGCAGAACCTGAAGCAACAGTCTGATCAGATATGCAGGACTATTGAGGTTGATACAATTGATCACCATCGCAGTAATTCGTCGCTGGTCGTAATGGAAGCTTGCGAAGATTGCGACAGGGATGGTGACGGCCTCTTTATTCCTCCCCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGTTCCATTATATGTCTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAACCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGGAATCATCCAGTTCTCATACATTGCAAGAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTGAGAAAACTGCAGAGGTGGTGCCTCACTTCTGTTTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAATTGTTCGATATCTCTGACTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGCTGTATGATCATCTCTGGTTCCTTCCAAGACGAAGAAGCTCGAAGCTCAGTGGAAAAAGTACGGCGACCACTCAACCAAAGGTTTGCAGCTGTTAATGATCACGGGCAATGA 747 45.38 MKFEEQNLKQQSDQICRTIEVDTIDHHRSNSSLVVMEACEDCDRDGDGLFIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSCSKSCMIISGSFQDEEARSSVEKVRRPLNQRFAAVNDHGQ 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5004130 5008368 + Tan0013567.1 Tan05g0689 751997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0689 248 Gene3D Protein tyrosine phosphatase superfamily 49 199 IPR029021 -
Tan05g0689 248 FunFam probable tyrosine-protein phosphatase At1g05000 49 199 - -
Tan05g0689 248 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 197 IPR029021 -
Tan05g0689 248 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311(InterPro)
Tan05g0689 248 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Tan05g0689 248 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791(InterPro)
Tan05g0689 248 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Tan05g0689 248 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Tan05g0689 248 Pfam Tyrosine phosphatase family 51 202 IPR004861 -
Tan05g0689 248 PANTHER TYROSINE-PROTEIN PHOSPHATASE 25 206 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Tan05g0689 248 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 209 IPR020422 GO:0006470(InterPro)
Tan05g0689 248 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 158 IPR000387 GO:0016311(InterPro)
Tan05g0689 248 CDD PFA-DSP_Siw14 49 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0134 Tan-Chr2:1243419 Tan05g0689 Tan-Chr5:5004130 3.50E-81 dispersed
Tan05g0689 Tan-Chr5:5004130 Tan05g0691 Tan-Chr5:5004130 2.20E-86 dispersed
Tan05g0689 Tan-Chr5:5004130 Tan05g0690 Tan-Chr5:5004130 8.90E-141 tandem
Tan09g0602 Tan-Chr9:52076011 Tan05g0689 Tan-Chr5:5004130 3.10E-59 transposed
Tan02g0133 Tan-Chr2:1243190 Tan05g0689 Tan-Chr5:5004130 7.00E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0689 K18045 - csv:101222170 399.438