Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0779 ATGCAGCTCCTTCTCCGCCGCCGTGGTTTTGGCTCCATAGGGGCGTTTTTCTTTGCCGCGGCTGTGCTCGAGTGGTTCACGGCGGCGGGTCAGCTCCAACACCGTGTGCCGGATCTACATTGGCTTCCGGCCACCGCCACGTGGTACGGAAGCCCCGAGGGCGATGGTAGTGACGGTGGAGCTTGTGGGTATGGAAATTTAGTGGATGTGAAGCCTCTAAGAGCCAGAGTCGGGGCTGTGAGTCCAGTTCTGTTCAAAAATGGCGAAGGCTGTGGAGCATGTTACAAAGTGAAATGTCTAGACCAGAGCATTTGCTCTAGACGAGCCGTTACTATCATTGTCACCGACGAGTGTCCCGGCGGGTATTGTTCTAATGGAAATACCCACTTCGATCTCAGCGGCGCCGCCTTCGGCCGTATGGCCATCACCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATATACCGACGAACTCCCTGTAAGTACCCAGGCAAGAACATCGCCTTCCATGTCAATGAAGGTTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGATGGAGATGGAGACATCGGTTCAATGCAAATAAAAGAAGCAAATTCAGGGGAGTGGCTGGATATGAACCATTTATGGGGAGCAAATTGGTGCATTATTGGTGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTAACAACATTATCAACAGGAAGAAGCCTCTCAGCCAGGGATATAATTCCAAGGAATTGGTCTCCAAAAGCGACTTACACTTCCCGCCTTAATTTCTTCTCTTAA 810 51.23 MQLLLRRRGFGSIGAFFFAAAVLEWFTAAGQLQHRVPDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLRARVGAVSPVLFKNGEGCGACYKVKCLDQSICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGSMQIKEANSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5689316 5690896 + Tan0012870.1 Tan05g0779 752087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0779 269 Gene3D - 28 165 IPR036908 -
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Tan05g0779 269 Gene3D - 166 268 IPR036749 -
Tan05g0779 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Tan05g0779 269 CDD DPBB_EXPB_N 41 164 - -
Tan05g0779 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Tan05g0779 269 Pfam Lytic transglycolase 79 157 IPR009009 -
Tan05g0779 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Tan05g0779 269 FunFam Beta-expansin 3 166 268 - -
Tan05g0779 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Tan05g0779 269 SMART dpbb_1 77 159 IPR007112 -
Tan05g0779 269 PANTHER EXPANSIN-B3 29 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan05g0779 269 FunFam Expansin B3 27 165 - -
Tan05g0779 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0232 Tan-Chr2:2036472 Tan05g0779 Tan-Chr5:5689316 5.70E-104 dispersed
Tan05g0779 Tan-Chr5:5689316 Tan03g1132 Tan-Chr3:67454049 7.40E-24 dispersed
Tan10g0038 Tan-Chr10:747853 Tan05g0779 Tan-Chr5:5689316 1.20E-64 transposed
Tan02g0231 Tan-Chr2:2035752 Tan05g0779 Tan-Chr5:5689316 4.00E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0779 K20628 - csv:101202998 508.064