Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0812 ATGAGATGGAATTCATTTTACACCAGAGCCTCTAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCGTCGTTTTCACTGTCAGTGGAGGTGGACTGGTGGCAGCTACTAATGGCAAATCTCTATATCATTCTGCATATGCTGATGCAGTCCAACAAGATGGTGATTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACCTCAAGAGCTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGTGGCACCGTCGAAGCACGGAGCATTGTCGAACCAATTCGTACTATCACAAAAAAGAAAGGGTTGAATATTGAATTTAGAGAAGCTGAGTGTTATAAGATTGATGCAGAGGAGAAGAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGAAGGGAAGAATTTGCTGTAGACTATGACTATCTGATAGTAGCCATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCATTTCTTGAAGGGAGTGGAAGATGCTCAAAGGATTCGTCAGTCCGTAATCGATTGTTTTGAACGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGCTGTTGAGGATTTAGCAGGGTTGTATCCTTCATTGAAAGACTACGTGAAAATAACTCTCCTCGAGGCAGGAGATCATATTTTGAACATGTTTGACAAGAGGATTACTGCCTTTGCTGAAGAAAAATTTCAGAGAGATGGGATTAACTTAAAAACTGGTTCCATGGTTGTGAAAGTTACTGATACGGAAATCTCCACTAAAGAAAGAGCAACCGGTGAATTTGTGTCTATTCCTTATGGAATGGTCGTTTGGTCCACCGGCATTGGCCCTCGGCCTCAAGTTGTCGATTTCATGAAGCAGATTGGACAGACAAACAGAAGAGCTTTGGCGACTGATGAGTGGCTAAGGGTGGAAGGATGTGATAGTGTCTACGCTCTTGGTGATTGTGCCACAATAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCAGTAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGAAAGAGTTTCAAGACGTGGTAGATGATATATGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTATTGAAGAAGTCACAATTGGATACACAGAAACAGTCGACTGAGCTCGATATCGAAAGCTTTACGTCCTTACTTTCTGAAGTTGATTCTCAGATGAAAAATCTGCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACAGGATGGAACAATGTGAGAAGTACCCTGAAGGCCCTCTTCGATTCAGAGGGACGGGACGACATCGGTTTCACCCCTTCAGGTACAAGCATTTTGGGCAGTTTGCTCCTCTGGGGGGAGAACAAACTGCAGCTCAACTACCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCAAGCAAGCTAGTAAGCTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1758 43.63 MRWNSFYTRASKAFHDHPSISKLLVVFTVSGGGLVAATNGKSLYHSAYADAVQQDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRTITKKKGLNIEFREAECYKIDAEEKKVFCRSSQDTNLGGREEFAVDYDYLIVAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQSVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFQRDGINLKTGSMVVKVTDTEISTKERATGEFVSIPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDSVYALGDCATINQRRVMEDIAVIFSKADKDKSGTLALKEFQDVVDDICERYPQVEIYLKKKQMKNFAALLKKSQLDTQKQSTELDIESFTSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6160687 6163425 + Tan0003485.1 Tan05g0812 752120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0812 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Tan05g0812 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Tan05g0812 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Tan05g0812 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Tan05g0812 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Tan05g0812 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Tan05g0812 585 SUPERFAMILY EF-hand 341 462 IPR011992 -
Tan05g0812 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Tan05g0812 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Tan05g0812 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Tan05g0812 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Tan05g0812 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Tan05g0812 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Tan05g0812 585 Gene3D - 51 433 - -
Tan05g0812 585 Gene3D - 434 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0491 Tan-Chr5:3371980 Tan05g0812 Tan-Chr5:6160687 1.00E-71 dispersed
Tan05g0492 Tan-Chr5:3371980 Tan05g0812 Tan-Chr5:6160687 1.00E-71 dispersed
Tan05g0812 Tan-Chr5:6160687 Tan05g3212 Tan-Chr5:84226030 5.30E-261 dispersed
Tan03g0240 Tan-Chr3:37303333 Tan05g0812 Tan-Chr5:6160687 3.20E-10 transposed
Tan02g0260 Tan-Chr2:2214707 Tan05g0812 Tan-Chr5:6160687 6.80E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0812 K03885 - csv:101209855 1113.6