Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0842 ATGCCTAAATTAGAAAAATTACAAACCAGACGGCCTGGATCTACATCTGTGGCCGAGACTCTTGCAAGATGGAAAGATTACAACGATCACCTTGATGCATGTAATGATGAGGCCAAACTCCCTCGTAGAGTTCCAGCCAAGGGATCCAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTAGGTACATTCCCAACTGCCATTGATGCCGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCATCAACAAAGGATTCTCCTGAAATCAATAGGTCTTCAATCTCTTCTCTAGGGTCAACTTCACTTAGTCTGAGTTCGGAGTCTACAATATCATCAGATCACTCCGAGGATTGTGCAGTTGAAGATGTCTAG 537 45.44 MPKLEKLQTRRPGSTSVAETLARWKDYNDHLDACNDEAKLPRRVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESSTKDSPEINRSSISSLGSTSLSLSSESTISSDHSEDCAVEDV 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6576367 6578881 - Tan0005905.1 Tan05g0842 752150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0842 178 CDD AP2 65 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677(InterPro)
Tan05g0842 178 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 168 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan05g0842 178 MobiDBLite consensus disorder prediction 142 168 - -
Tan05g0842 178 Pfam AP2 domain 66 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 SMART rav1_2 66 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 MobiDBLite consensus disorder prediction 133 178 - -
Tan05g0842 178 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0842 178 FunFam Ethylene-responsive transcription factor 2 65 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0754 Tan-Chr3:63470986 Tan05g0842 Tan-Chr5:6576367 3.60E-37 dispersed
Tan05g0842 Tan-Chr5:6576367 Tan11g0296 Tan-Chr11:2356250 1.50E-49 dispersed
Tan05g0842 Tan-Chr5:6576367 Tan02g2020 Tan-Chr2:89445874 6.00E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27449 PF00847 AP2 4.50E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0842 - - - 0.0