Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0850 ATGGAATACTCTGCAGGAAACTGGAACTGGCTCTTCGATTACTCTGCAATGGATGATCTCGCCGTCGCCGGCGGCAACTTCTCCCCGCCGCAGTCCATCAGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGCCTGGAGGTAGACTGCTCATATGGAGATCTGGACAGCTTGCAGGATGTGGGTCGGAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTTCCTCTAAGGCCTGCAGAGAGAAATTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCGATCTTGAATGATGCTATCAGAATGGTGACTGATTTACAAAGTGAAACTCAGAAGCTGAAAGAATCTAAGGAGGATTTGAAGGCAAAAATCAAAGAATTGAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCATATCAAAGCAGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCTCCTACATTGTCAGCTGCATTTACAGCGCAAGGGCAAGCTGCTGGTAACAAGCTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCAGTCGACATATCTCAGGATCATGTGCTTCGCCCACCGGTTGCTTAA 717 47.84 MEYSAGNWNWLFDYSAMDDLAVAGGNFSPPQSISFSWSNPSINFSSKDSLEVDCSYGDLDSLQDVGRKRPRAETSAASSSKACREKLRRDKLNERFLELAAVLEPGKPPKTDKVAILNDAIRMVTDLQSETQKLKESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELHIKAVNTRAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6645600 6648918 + Tan0012808.1 Tan05g0850 752158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0850 238 Coils Coil 117 179 - -
Tan05g0850 238 PANTHER BHLH TRANSCRIPTION FACTOR 9 238 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Tan05g0850 238 Gene3D - 76 153 IPR036638 GO:0046983(InterPro)
Tan05g0850 238 FunFam Transcription factor bHLH34 67 125 - -
Tan05g0850 238 Pfam Helix-loop-helix DNA-binding domain 80 128 IPR011598 GO:0046983(InterPro)
Tan05g0850 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Tan05g0850 238 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Tan05g0850 238 CDD bHLH_AtILR3_like 81 156 - -
Tan05g0850 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0850 Tan-Chr5:6645600 Tan05g3165 Tan-Chr5:83609454 5.00E-40 dispersed
Tan01g4506 Tan-Chr1:110703556 Tan05g0850 Tan-Chr5:6645600 8.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27450 PF00010 HLH 2.90E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0850 - - - 0.0