Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0864 ATGAACCATGGTTCGAATGCCTGGCGAGAAGAGTCAGAAGACAAGAGGAGAATTAAAAATTGGGGAAGAAAAACGATGAGAGTTCATAAAATACTCCAAAAGCCAAAAAGATCTTTTTGTGATATGTTATCATGTTCTTTATCTAAGGACTCGTTCGTTAGTGATGCCAAAGGTGAGGCTTCCAGAGAAATTGATCTCGAGAAGGGAACGCGAGTTCTACCGAGCTATTCTGACATGGGAATGGAAGCTTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGCAGATAAGCTCTCTGGGCTTCTTATTAAATTGAAGGATGCTAATGAGGAATCGAAGTCTGTTACAAAAGCATCAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATTGCACGTAATATCAAAGGGAAGCTGGAAGCTGTAAATAAAGATAACTTAACCAATAGGCAAAAGCCTGGATGCGAGAAGGGAACGGCCATTGACAGAGCACGAATGAACGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGTCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGCACCAGACCAGATGAGACGATGATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGAACAAATGGGACGAGGACAGGTTATCAGTACCGTGGAAGAAATTCAAGAGCGACACGACGCAGTTAAAGAAATCGAGAAAAGGCTCTCGGAATTGCATCAGATTTACATTGACATGGCAGTTTTAGTGGAGGCCCAAGCTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCAGTCGACCACGTTCGAACGGGAACCGATGCACTCCAGACAGCAAAGAGCTTACAGAAGAGGTCAAGAAAATGCATGATGATCGCCATCATATTTCTGCTGGTTGTAGCAATCATAATTGTCCTCTCAGTTTTGAAACCATGGAAGAAGTAA 1047 41.26 MNHGSNAWREESEDKRRIKNWGRKTMRVHKILQKPKRSFCDMLSCSLSKDSFVSDAKGEASREIDLEKGTRVLPSYSDMGMEAFNKQIQEVEVQADKLSGLLIKLKDANEESKSVTKASEMKAIKKRMEKDIDEVGKIARNIKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDETMIDHLIETGNSEQIFQNAFEQMGRGQVISTVEEIQERHDAVKEIEKRLSELHQIYIDMAVLVEAQAEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIAIIFLLVVAIIIVLSVLKPWKK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6787038 6791586 - Tan0006612.1 Tan05g0864 752172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0864 348 SMART tSNARE_6 246 313 IPR000727 -
Tan05g0864 348 Coils Coil 81 108 - -
Tan05g0864 348 PANTHER SYNTAXIN 83 330 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan05g0864 348 CDD SynN 81 238 IPR006011 GO:0016020(InterPro)
Tan05g0864 348 SUPERFAMILY t-snare proteins 78 306 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan05g0864 348 Gene3D - 77 205 - -
Tan05g0864 348 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Tan05g0864 348 FunFam Syntaxin 132 244 344 - -
Tan05g0864 348 Pfam Syntaxin 84 286 IPR006011 GO:0016020(InterPro)
Tan05g0864 348 SMART SynN_4 76 202 IPR006011 GO:0016020(InterPro)
Tan05g0864 348 Gene3D - 242 344 - -
Tan05g0864 348 Pfam SNARE domain 287 339 IPR000727 -
Tan05g0864 348 CDD SNARE_syntaxin1-like 250 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0864 Tan-Chr5:6787038 Tan10g1572 Tan-Chr10:25325195 8.80E-86 dispersed
Tan05g0863 Tan-Chr5:6777016 Tan05g0864 Tan-Chr5:6787038 1.40E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0864 K08486 - csv:101214355 520.776