Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0868 ATGGAGGTGTTTTGGATTTGGAGAAGTGGCCATTGGGTCAAAACCAGAGTGCTGTTATTTGCATTGTTCTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTCTCTCGAAACACAAGCGTTCCTTCTTCGAATCCGAGGGTGCTGAACATTGGAGTTCTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCTGTGGACGATGTCAATGCTGACAACAGCATTCTTCCTGGAACAAAGCTGAATGTGATCTTACATGACACAAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAGTCCTCGGGCATCGCTCACGTCATTTCCCATCTTATCAATGAACTTCATGTACCGCTTCTATCATTTGGCGCTACGGATCCTTCTTTGTCCGCACTACAATACCCGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAGATGAATGCAATTGCTGATCTGATAGGTTATTTTGAATGGAGAGAGGTCGTTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGGGTATCGGCATTGAGTGATGCCTTGGCGAAGAAGCGAGCCAGGATCTCTTACAAGGCTGCCTTCCCTCCTGGATCCCCCACTAGCGTTATTAGTGACTTGTTGGTTTCAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTTAATCCTGACACTGGTTTATCAGTATTTTCGATTGCTAAGAAACTTCAGATGATGAGCAGTGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCCTTCGAAACAAATAATCCTGATGTAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGTCACCACACCGCAGACAGTGATCTGAAGAAGAACTTCATCTCCAAATGGAAGAATCTAAAATACAAGAAGAGTACAAACTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCTCATGCTCTTCACACATTCTTTAAAGAAGGTGGCAATATATCTTTTTCTAGTGACTCGAAGTTACGTGAAATCAATGGAAGCATGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACGGGTGTAAGTGGGCAGATTCAATTTGGTGACGACAGAAATTTGGTTCATCCAGCCTATGATATCCTGAACATTGGGGGAACTGGTTTGCGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAGCTTATATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTACAGTGTAATATGGCCGGGTGAAGTAACGACCGTTCCTCGAGGATGGGTGTTCCCGCACAATGGGAAACCATTGCAGATTGTAGTCCCTAACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAATCCTCCAGGAGTTAAAGGATATTGTATAGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCATACATATATATTATATGGAGATGGAAAGGACAATCCTGAATACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGTGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCATTTATGGAGTCGGGACTTGTCGTAGTTACTGTCGTCAAAGAGGAGAAGTCTAGTCCGTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTTGAGCACCGGACTAATGAAGAATTCCGTGGTCCACCAAGGCAACAACTAATAACAATTTTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAATTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACGTCAAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCGTTGGAGTTCAGGAAGGGTCATTTGCATTGAAGTATCTGACTGATGAGCTGAATATAGCAGCATCTAGGATCGTTAAGTTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGGCGTGGAACTGCAAATGGCGGGGTAGCTGCCATTGTGGATGAGCTTCCTTACGTTGAGCTTTTCTTGTCTGGCACCAATTGCATATTCAGGACGGTCGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGTCGACGTTAACCAACTATCACTGAGTAGCTTTTGGGGACTGTTCCTAATTTGTGGCATTGCCTGCTTTGGTGCTCTTTTGATATTCTTCTTTAGAGTACTATTCCAATACCGAAGATCTACCCCGGAAACTCAGCCTGAAGTCGAGGAGACCGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACAAGCTTCATGCAATTTGTAGATCAAAGAGAAGTCAAAAAGCCTAAAAGAAAATCCATTGATATCAAACAAGCTAGTCAGGACTTGGAAGGCCACCTTGATTCGCCACCTCATTAG 2808 43.34 MEVFWIWRSGHWVKTRVLLFALFFGMWMPLGVIGVSRNTSVPSSNPRVLNIGVLFTLDSVIGRSAQPAILAAVDDVNADNSILPGTKLNVILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHLINELHVPLLSFGATDPSLSALQYPYFVRTTQSDYFQMNAIADLIGYFEWREVVAIFVDDDNGRSGVSALSDALAKKRARISYKAAFPPGSPTSVISDLLVSVNLMESRVYIVHVNPDTGLSVFSIAKKLQMMSSGYVWIATDWLPSFLDSFETNNPDVMNQLQGVVALRHHTADSDLKKNFISKWKNLKYKKSTNFNSYALYAYDSVWLAAHALHTFFKEGGNISFSSDSKLREINGSMLHLTSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLVHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPESLYPKPLNASPNNHLYSVIWPGEVTTVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDNPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKVEGIDSLISSTDAVGVQEGSFALKYLTDELNIAASRIVKLKNQEEYADALRRGTANGGVAAIVDELPYVELFLSGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFGALLIFFFRVLFQYRRSTPETQPEVEETEPVRTRRLSRTTSFMQFVDQREVKKPKRKSIDIKQASQDLEGHLDSPPH 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6890518 6896060 - Tan0021177.1 Tan05g0868 752176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0868 935 MobiDBLite consensus disorder prediction 907 935 - -
Tan05g0868 935 Pfam Ligated ion channel L-glutamate- and glycine-binding site 502 585 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan05g0868 935 Gene3D - 593 728 - -
Tan05g0868 935 MobiDBLite consensus disorder prediction 907 925 - -
Tan05g0868 935 SUPERFAMILY Periplasmic binding protein-like I 43 475 IPR028082 -
Tan05g0868 935 PIRSF IGluLR_plant 13 932 IPR017103 -
Tan05g0868 935 Gene3D - 68 412 - -
Tan05g0868 935 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Tan05g0868 935 Gene3D - 776 831 - -
Tan05g0868 935 CDD GluR_Plant 481 824 - -
Tan05g0868 935 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Tan05g0868 935 Coils Coil 720 740 - -
Tan05g0868 935 FunFam Glutamate receptor 720 828 - -
Tan05g0868 935 Gene3D - 164 437 - -
Tan05g0868 935 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Tan05g0868 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Tan05g0868 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Tan05g0868 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Tan05g0868 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 50 912 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan05g0868 935 FunFam Glutamate receptor 478 594 - -
Tan05g0868 935 Gene3D - 477 592 - -
Tan05g0868 935 FunFam Glutamate receptor 164 326 - -
Tan05g0868 935 SMART GluR_14 484 826 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan05g0868 935 FunFam Glutamate receptor 594 724 - -
Tan05g0868 935 Pfam Ligand-gated ion channel 603 857 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5130 Tan-Chr1:116637833 Tan05g0868 Tan-Chr5:6890518 5.00E-290 dispersed
Tan03g2176 Tan-Chr3:76350376 Tan05g0868 Tan-Chr5:6890518 1.30E-291 dispersed
Tan05g0868 Tan-Chr5:6890518 Tan05g0870 Tan-Chr5:6927488 7.70E-254 dispersed
Tan05g0868 Tan-Chr5:6890518 Tan05g0869 Tan-Chr5:6890518 0.00E+00 tandem
Tan02g1558 Tan-Chr2:69029092 Tan05g0868 Tan-Chr5:6890518 2.10E-142 transposed
Tan02g0331 Tan-Chr2:2735954 Tan05g0868 Tan-Chr5:6890518 1.60E-259 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0868 K05387 - csv:101215485 1640.94