Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0870 ATGGAGAGCTTATTAATTTTTACATTGATTGGTTCGATATGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCGGTTGTGCACATTGGTGCAGTTTTCACTTTTGATTCAGTTATAGGAAGAGCAGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTTAATGCTGATCCTTCAATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGATTCTTGAGAAAGACGTAGTAGCCATCATTGGGCCTCAATCTTCAGTTGTAGCTCATATAGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCTTTTTTCCTACGTACTACTCAGAGTGACTCCTATCAAATGACCGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAAGAGGTGATCACGATATTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACGGATGAACTTGATAAGAAGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCAATTCAATCTCAGTGATATCGAAGACATACTCAATAAATCAAAGTTACTTGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAGATAGCTCATCAACTCAATATGATGACAAGTGATTATGTGTGGTTGGCAACAGATTGGCTTTCTACTACCTTGGATTCAATTCTGCCCGTACACCAAACCTCTCTAAACATGCTTCAAGGAGTGGTTGTACTTCGTCAACATACTCCTGAATCCAGCCATAAAACAACATTATGGTCTCGGTTAAGGGAGATGCTGCCAGAAGGCTCCAGAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTTCAATTGATAAGTTTCTTAATGAAGGTAGGAGCATTACCTTCTCTTTGAAGAACAAGTTTCATGATTTAAATACAACTAAAATGCCTTGGGGGAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGACAAAATTTACTGGTTTAAGTGGTCAGATTGAGTTCAATTCAGATCGGAACATTGTTAGTAGAGGCTATGAGGTGATCAATATCGATCAGACAGGATTGCGTAGAGTTGGTTATTGGTCTAATATCACAGGCTTTACAATCCAATCACCTGAAACTCTGAAACAGAAAGGAATTCATTACACTCACCTGAACCAGACTCTTGGAAATGTTACCTGGCCTGGTGGAAAGACTGCAAGACCACGTGGATGGGTGATTGCAGACAATGAAAGACCATTGATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACATTAGTCAATGGAAGCGACAAAAACATTGAAGGATATTGTATCGATCTGTTCAATGAAGCAAGGAAGTTGGTCCCGTACGACGTTCCTTACAGTTTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATAATGACCTTGTGAAGAACGTAGCGAATGGTATATTTGATGCCGCTGTTGGAGATATTGCAATTGTAACCAATCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGTCTTGTTATTGTAGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCGGCGTCCTTTTTTATGATTGGCGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGACGATTTCCGTGGTCCACCAAAGAGACAGCTTGTAACAGTAATACTGTTCAGCTTCTCAACATTGTTTAAAACAAATCAGGAAGAGACTGTAAGTCCACTTGGGCGTATGGTAATGGTGGTGTGGCTTTTCTTGTTGATGGTTATCACATCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAACAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACATCCAATTGGCTACCAGGTAGGATCGTTCGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCCCGATCGAGGCTTGTATCTCTAGGCTCTCCAGAAGAGTATGAATCAGCACTGCTGAAAGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTATCGATGAACTTCCATATATGGAGTTATTCTTATCAGGGAGGAATGATTTTGGAATGATCGGGCAGCCATTTACCAAGAGTGGATGGGGATTCGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATTTCAACAGCAATTCTAAAGCTTTCCGAGAATGGCAAGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACAAACTTCACTTGGTCAGCTTCTGGGGTCTATATCTATTGTGTGGTGCCTTTTCACTCGTGGCTCTTCTTATATTTTTGCTACGAATAGTTCGACAATTCGCTCGCTACATAAGACAACAAAAGGAATCTTCTCGTGCAGAGTTGGTATCATCAAATTCAAACTCAAGCTGGACTCAGGTTATTTATAAGTTTATCGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGAATGAAACTCAGAATCAGGCTAACTGA 2742 40.37 MESLLIFTLIGSIWAFLAGSACCQRPAVVHIGAVFTFDSVIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQILEKDVVAIIGPQSSVVAHIVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMTAMAELIDFYEWKEVITIFVDDDYGRNGISTLTDELDKKMFKISYKIPLPSQFNLSDIEDILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLNMMTSDYVWLATDWLSTTLDSILPVHQTSLNMLQGVVVLRQHTPESSHKTTLWSRLREMLPEGSRNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSLKNKFHDLNTTKMPWGKLKIFDDGALLLSILLQTKFTGLSGQIEFNSDRNIVSRGYEVINIDQTGLRRVGYWSNITGFTIQSPETLKQKGIHYTHLNQTLGNVTWPGGKTARPRGWVIADNERPLIIGVPRRVSFIEFVTLVNGSDKNIEGYCIDLFNEARKLVPYDVPYSFIPFGNGYSNPSYNDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEETVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEHPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIIDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNKLHLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSRAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKNETQNQAN 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6927488 6932360 - Tan0000519.1 Tan05g0870 752178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0870 913 FunFam Glutamate receptor 578 708 - -
Tan05g0870 913 Pfam Receptor family ligand binding region 46 403 IPR001828 -
Tan05g0870 913 Gene3D - 757 815 - -
Tan05g0870 913 Gene3D - 476 577 - -
Tan05g0870 913 PIRSF IGluLR_plant 1 913 IPR017103 -
Tan05g0870 913 Pfam Ligand-gated ion channel 587 839 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan05g0870 913 CDD GluR_Plant 464 808 - -
Tan05g0870 913 Gene3D - 578 710 - -
Tan05g0870 913 FunFam Glutamate receptor 704 812 - -
Tan05g0870 913 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Tan05g0870 913 SMART GluR_14 467 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan05g0870 913 FunFam Glutamate receptor 461 578 - -
Tan05g0870 913 Gene3D - 144 418 - -
Tan05g0870 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 875 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan05g0870 913 SUPERFAMILY Periplasmic binding protein-like I 22 457 IPR028082 -
Tan05g0870 913 Pfam Ligated ion channel L-glutamate- and glycine-binding site 484 569 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan05g0870 913 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Tan05g0870 913 Gene3D - 47 394 - -
Tan05g0870 913 Coils Coil 892 912 - -
Tan05g0870 913 FunFam Glutamate receptor 144 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0333 Tan-Chr2:2735954 Tan05g0870 Tan-Chr5:6927488 0.00E+00 dispersed
Tan02g0334 Tan-Chr2:2735954 Tan05g0870 Tan-Chr5:6927488 5.80E-232 dispersed
Tan05g0868 Tan-Chr5:6890518 Tan05g0870 Tan-Chr5:6927488 7.70E-254 dispersed
Tan05g0869 Tan-Chr5:6890518 Tan05g0870 Tan-Chr5:6927488 7.70E-254 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0870 K05387 - csv:101215715 1672.91