Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0925 ATGCCGAAGGGTTTGAAGAGTAAATGCCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAATGTGCAAGGAAGGAGAGTCGTACTACTGATGTTGCTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAACGAACCGTCACCTGCCTCTTCATATGTTGAGGGCAGTCTTGGATCGTTCTCGCAAGAGTTAGCCCGTCTTCTCGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGTCTGAGCCTGATCTCCATTGCGTTCTTGCCAGCAATCCGTCAGATTTTCAGCAGGATGGTTCTGGTATTCCGGAGCTCCAACAGCATAGTTTTCTTGGCTTTGAAGAGTGCAAAGTTTCTACTCCAGTTCTACAGAATTATTCGTTTTACAAATCAGACATGGCTACTCAGTCTAATAGTCAAGATTTCAAATTAGATCAAAACTTCGTGCAGAACATATTGGTCAATAAGGATGATATGTCTACGTTGGATTGCCATTTATTGGACACGCTTCAAGAGTTCGACTATGGGGTTCTTGTTGGGGCATATGATGCGGGAGACATTAGTCAGGACACAATGCCTGGCATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTCTGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGCCAGGACTATTGCAGTAGCTGCCATTCTATGCTTGCAATAAATGAAGGCCTTCCAGGAATGGCTCCAATATTGCGCCCTGGGGGCATTGGCTTAAAGGATGGTCCACTGTTTGCTGCTCTTCTTGCAAAGACACAGACCAAAGAAGTTGGAATACCTATATGTGATGGCGCTGCAACGAGAAAATCTCCATGGAATGCTCCTGAGCTGTTTGATATTTCATTTCTTGAGGGTGAGACAGTCAGGGAATGGCTCTATTTTGACAAGCCTAGACGTGCCTTTGAGAGTGGTAATCGAAAGCAAAGGTCATTACCGGATTATAGAGGTCGTGGTTGGCACGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCCTACTACATGGATCCACAGCCATCAAGCTCTTTTGAATGGCATTTGTACGAATATGATATCAGCAATTATGATTCATTTGCATTATATAGGCTGGAACTCAAGCAAGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAATCTTAA 1365 44.98 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQCARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSYVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKSEPDLHCVLASNPSDFQQDGSGIPELQQHSFLGFEECKVSTPVLQNYSFYKSDMATQSNSQDFKLDQNFVQNILVNKDDMSTLDCHLLDTLQEFDYGVLVGAYDAGDISQDTMPGILPNISPPPSAFLGPICALWDCFRPAQGSKWCQDYCSSCHSMLAINEGLPGMAPILRPGGIGLKDGPLFAALLAKTQTKEVGIPICDGAATRKSPWNAPELFDISFLEGETVREWLYFDKPRRAFESGNRKQRSLPDYRGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSFEWHLYEYDISNYDSFALYRLELKQADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7440464 7444884 - Tan0008916.1 Tan05g0925 752233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0925 454 MobiDBLite consensus disorder prediction 419 454 - -
Tan05g0925 454 PANTHER TRANSCRIPTION FACTOR VOZ1 1 450 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0925 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2528 Tan-Chr3:78603553 Tan05g0925 Tan-Chr5:7440464 1.20E-103 dispersed
Tan05g0925 Tan-Chr5:7440464 Tan05g0927 Tan-Chr5:7440464 1.60E-268 dispersed
Tan05g0925 Tan-Chr5:7440464 Tan05g0926 Tan-Chr5:7440464 1.60E-268 tandem
Tan03g2527 Tan-Chr3:78603553 Tan05g0925 Tan-Chr5:7440464 6.40E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g218 . . Bda06g00389 . . . . . . . Cma02g00196 Cma20g00581 . Car20g00557 . . . . . . . . . . . . . . . . . . Cone10ag1260 . . . . Chy11g00658 . . . . . . . . Bma12g00825 . Cmo02g00199 Cmo20g00652 . . . . Cpe16g00412 Cpe05g01419 Bhi10g01369 Tan05g0925 . . Hepe08g0429 . . . . . . . . . . . . Cme11g00861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2527 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 71.1 6.3e-199 691.0
Tan03g2528 . 84 440 VOZ-9 Transcription Factor Family AT1G28520 69.2 2.4e-142 503.1
Tan05g0925 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0926 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0927 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0928 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0929 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0925 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0926 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0927 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan03g2527 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.1 4.6e-103 372.5
Tan03g2528 . 163 380 VOZ-9 Transcription Factor Family AT2G42400 70.6 6.9e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27462 None None None None Tan TF