Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0927 ATGCCGAAGGGTTTGAAGAGTAAATGCCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAATGTGCAAGGAAGGAGAGTCGTACTACTGATGTTGCTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAACGAACCGTCACCTGCCTCTTCATATGTTGAGGGCAGTCTTGGATCGTTCTCGCAAGAGTTAGCCCGTCTTCTCGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGTCTGAGCCTGATCTCCATTGCGTTCTTGCCAGCAATCCGTCAGATTTTCAGCAGGATGGTTCTGGTATTCCGGAGCTCCAACAGCATAGTTTTCTTGGCTTTGAAGAGTGCAAAGTTTCTACTCCAGTTCTACAGAATTATTCGTTTTACAAATCAGACATGGCTACTCAGTCTAATAGTCAAGATTTCAAATTAGATCAAAACTTCGTGCAGAACATATTGGTCAATAAGGATGATATGTCTACGTTGGATTGCCATTTATTGGACACGCTTCAAGAGTTCGACTATGGGGTTCTTGTTGGGGCATATGATGCGGGAGACATTAGTCAGGACACAATGCCTGGCATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTCTGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGCCAGGACTATTGCAGTAGCTGCCATTCTATGCTTGCAATAAATGAAGGCCTTCCAGGAATGGCTCCAATATTGCGCCCTGGGGGCATTGGCTTAAAGGATGGTCCACTGTTTGCTGCTCTTCTTGCAAAGACACAGACCAAAGAAGTTGGAATACCTATATGTGATGGCGCTGCAACGAGAAAATCTCCATGGAATGCTCCTGAGCTGTTTGATATTTCATTTCTTGAGGGTGAGACAGTCAGGGAATGGCTCTATTTTGACAAGCCTAGACGTGCCTTTGAGAGTGGTAATCGAAAGCAAAGGTCATTACCGGATTATAGAGGTCGTGGTTGGCACGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCCTACTACATGGATCCACAGCCATCAAGCTCTTTTGAATGGCATTTGTACGAATATGATATCAGCAATTATGATTCATTTGCATTATATAGGCTGGAACTCAAGCAAGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAATCTTAA 1365 44.98 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQCARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSYVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKSEPDLHCVLASNPSDFQQDGSGIPELQQHSFLGFEECKVSTPVLQNYSFYKSDMATQSNSQDFKLDQNFVQNILVNKDDMSTLDCHLLDTLQEFDYGVLVGAYDAGDISQDTMPGILPNISPPPSAFLGPICALWDCFRPAQGSKWCQDYCSSCHSMLAINEGLPGMAPILRPGGIGLKDGPLFAALLAKTQTKEVGIPICDGAATRKSPWNAPELFDISFLEGETVREWLYFDKPRRAFESGNRKQRSLPDYRGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSFEWHLYEYDISNYDSFALYRLELKQADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7440464 7444884 - Tan0008916.3 Tan05g0927 752235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0927 454 MobiDBLite consensus disorder prediction 419 454 - -
Tan05g0927 454 PANTHER TRANSCRIPTION FACTOR VOZ1 1 450 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0927 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0925 Tan-Chr5:7440464 Tan05g0927 Tan-Chr5:7440464 1.60E-268 dispersed
Tan05g0927 Tan-Chr5:7440464 Tan05g0929 Tan-Chr5:7441603 4.70E-188 dispersed
Tan05g0926 Tan-Chr5:7440464 Tan05g0927 Tan-Chr5:7440464 1.60E-268 tandem
Tan05g0927 Tan-Chr5:7440464 Tan05g0928 Tan-Chr5:7441603 4.70E-188 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2527 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 71.1 6.3e-199 691.0
Tan03g2528 . 84 440 VOZ-9 Transcription Factor Family AT1G28520 69.2 2.4e-142 503.1
Tan05g0925 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0926 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0927 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0928 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0929 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0925 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0926 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0927 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan03g2527 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.1 4.6e-103 372.5
Tan03g2528 . 163 380 VOZ-9 Transcription Factor Family AT2G42400 70.6 6.9e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27464 None None None None Tan TF