Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0934 ATGATTGAGAAAATGGCAGATGATGAATTTTCAAACTGTTTTCTCCAAATCCCTCTTGCCGGATCCAACTCTTCTCTCACCAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCCGAAGCAGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACAAATAGGTTCCTGTGCGAAATATGCGGGAAGGGGTTTCAAAGAGACCAAAACTTGCAGCTGCATAGGCGAGGGCATAACCTTCCATGGAAGCTGAAGCAAAGAAGCAGCAAAGAGCCAAGGAAGAGAGTGTATGTGTGCCCTGAGAAGAGCTGCGTGCACCATCATCCATCGAGAGCACTGGGAGACCTCACAGGGATCAAGAAGCACTTTTGTAGAAAGCACGGAGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTTCAGTCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGTGGAACTCTATTTTCGAGGAGAGACAGCTTCATCACTCACAGAGCCTTCTGCGATGCATTAGCTGAAGAAACAGCAAGAGTAAACGCAGCCACAACAATAACCGCCGGCGCCAGCAATTTGAATTACAATTTCATGGCTGAATCCCCATTCATGGCCCAACATTTCCCTTCAATTTTCAAGCCAATCTCAATGAACGAAGCAACAATATTATTCAATCATCAACAACAAACAACCAGCTGCAATGGCCTGATCTCGTTGAGAACCAACAACAACAATAATCTACAACCACTTCCTCATATTAATTCAGGCCTAATGTACTGTGACCCTTTTGTTAATTCTTGCCCAACACCAGCACCAGCACCAGCACCAGCACCAGCTGATTATAATAATCTGAATTGGGTATTTGGAACAAAGGTTAATAATTCTGACCATGAAAATCAAGATTCAAGCCAAAATCAGCCATTGATGAGTGGTGGTGTTTCTTCACTGTACAGCCACGAATTACAGCAAATGAATCAAACCCACATGGCGAATATGTCAGCCACTGCTTTGCTGCAAAAAGCTTCTCAAATTGGGCCAAATTCCAGCTCCGGCCCATCCATACTCCAAGAGGGATTTGCATTCAAATGCAGTGGCAGTACAGTTCAAAATGGGAGTGAATTTTCTAATTCTGGAGCTGCAATCCCAATTATGGCGACGGTTGGCAGTTTTGTTGTTGAGAATGAGAATGAGAATGAGATGTACACTGCAAAACGCCGTCGTACTCAGAGTGAATTAGAGGGAAGTGGAAGTGGAACAACAGGAGGAGGGCAGACGAGGGATTTTCTTGGAGTTGGTGCCAACACTATTTGCCACACCTCCTCAATCAATGGATGGATTTAA 1374 44.91 MIEKMADDEFSNCFLQIPLAGSNSSLTKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAGASNLNYNFMAESPFMAQHFPSIFKPISMNEATILFNHQQQTTSCNGLISLRTNNNNNLQPLPHINSGLMYCDPFVNSCPTPAPAPAPAPADYNNLNWVFGTKVNNSDHENQDSSQNQPLMSGGVSSLYSHELQQMNQTHMANMSATALLQKASQIGPNSSSGPSILQEGFAFKCSGSTVQNGSEFSNSGAAIPIMATVGSFVVENENENEMYTAKRRRTQSELEGSGSGTTGGGQTRDFLGVGANTICHTSSINGWI 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7583683 7585694 + Tan0020478.1 Tan05g0934 752242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0934 457 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Tan05g0934 457 SMART c2h2final6 133 153 IPR013087 -
Tan05g0934 457 SMART c2h2final6 57 79 IPR013087 -
Tan05g0934 457 MobiDBLite consensus disorder prediction 303 323 - -
Tan05g0934 457 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Tan05g0934 457 MobiDBLite consensus disorder prediction 415 435 - -
Tan05g0934 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Tan05g0934 457 Gene3D Classic Zinc Finger 53 80 - -
Tan05g0934 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 444 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan05g0934 457 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tan05g0934 457 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 196 - -
Tan05g0934 457 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Tan05g0934 457 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Tan05g0934 457 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Tan05g0934 457 Gene3D Classic Zinc Finger 92 181 - -
Tan05g0934 457 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1962 Tan-Chr3:74734412 Tan05g0934 Tan-Chr5:7583683 1.20E-88 dispersed
Tan05g0934 Tan-Chr5:7583683 Tan06g1021 Tan-Chr6:9141105 1.00E-86 dispersed
Tan09g0200 Tan-Chr9:11128365 Tan05g0934 Tan-Chr5:7583683 8.70E-83 transposed
Tan02g0400 Tan-Chr2:3416286 Tan05g0934 Tan-Chr5:7583683 7.80E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27467 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0934 K25870 - csv:101211656 520.39