Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0948 ATGCCAAAGAATAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCAGGGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTTGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGATAGCACCCGTCTCAATGAGGGCATCGCTGGTGGTATCGATGATGAGGATGATGGTGGGGTTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAG 438 45.21 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7727661 7729785 + Tan0011933.1 Tan05g0948 752256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0948 145 Gene3D - 2 145 IPR012340 -
Tan05g0948 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Tan05g0948 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Tan05g0948 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Tan05g0948 145 MobiDBLite consensus disorder prediction 1 25 - -
Tan05g0948 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan05g0948 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1284 Tan-Chr10:14779839 Tan05g0948 Tan-Chr5:7727661 1.20E-76 transposed
Tan02g0409 Tan-Chr2:3531085 Tan05g0948 Tan-Chr5:7727661 3.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0948 K03236 - rcu:8265575 259.996