Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0966 ATGCAAGCCTCTCAGCTTCATAGAGGTCAACATATGTCGAAGAGACTGTGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTTTCTCCGAATTTCAAACTTTAGGTCGCCGATTATATTCTGGTGCTGGCAACCAAAGAGCTCAGTTCATTGGTGATCAGTACTGCACTCTGGAGTCGTCCTCAGGAAGCCACGGCTATGCAACTCAGAACTCAACGTCGACCGTCACTTTCTCGCCCAATGGGAGTCCGGTATCACAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCCCCTGACAATACATATGGCTCCCCAGTAAGTGGATCGAGCATAACAGATGATATTAGTGACTTTAGGCACAAACTGCGGGAATTGGAAACGGTGATGCTTGGCCCTGATTCTGATATTATTGATAGTTTTGATAGTATCTACCAGGAAGGAACAGACAATCAAGAGATGGGAAGTTGGGGACAAGTGATGGATGCTATCACTAAAGGAAACTTAAAAAAGATCCTAATATCTTGTGCTAAAGCGGTATCAGATAATGATGCTTTAATGGCACAATGGCTTATGGATGAATTGCGTACGATGGTATCGGTTCGTGGTGAGCCGATGCAGAGGTTGGGAGCGTATATGTTGGAGGGGTTGGTTGCACGGTTAGCCTCCTCGGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCTGCAAGTGCGGAGCTCCTCTCTTATATGCACGTTCTTTACGAAGTTTGCCCATATTTCAAATTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGACCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGTTGTTTAATGTGCCATTTGAGTTTCACTCCACTGCCATTTCTGGCTGCAATGTTCAGCAAAAAAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCAGATGAAAGCGTAAGCACCGAAAATCATCGAGATAGACTATTGAGACTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTTTCCCCGGTTCATCGAGACGCTGGATTACTACAACGCCATGTTTGAATCAATCGATGTTACTCTTTCAAGACAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTTAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGGCACGAGCTACTCGGAAAGTGGAGACTGCGATTCGCAATGGCAGGATTTACTCCTTACCCATTAAGCTCTTTGGTAAACGCTACCATCAAAACGTTATTGGATAACTATTCTAACAGGTATAGGCTTGAAGAGAGAGAAGGGGCTCTATATCTAGGCTGGATGGATAGAGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1626 45.08 MQASQLHRGQHMSKRLCYQPLQGVDAYCFSEFQTLGRRLYSGAGNQRAQFIGDQYCTLESSSGSHGYATQNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSPVSGSSITDDISDFRHKLRELETVMLGPDSDIIDSFDSIYQEGTDNQEMGSWGQVMDAITKGNLKKILISCAKAVSDNDALMAQWLMDELRTMVSVRGEPMQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASAELLSYMHVLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSTAISGCNVQQKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLSRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7949260 7952467 - Tan0015970.2 Tan05g0966 752274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0966 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 148 540 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan05g0966 541 MobiDBLite consensus disorder prediction 62 114 - -
Tan05g0966 541 ProSiteProfiles GRAS family profile. 162 541 IPR005202 -
Tan05g0966 541 Pfam GRAS domain family 171 541 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0966 Tan-Chr5:7949260 Tan11g0122 Tan-Chr11:1245175 7.30E-71 dispersed
Tan05g0965 Tan-Chr5:7949260 Tan05g0966 Tan-Chr5:7949260 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27472 PF03514 GRAS 1.40E-136 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0966 K27748 - csv:101221914 1008.05