Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0970 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTTAAGGTGCTTACTGAGGATGTCTTTGAGCTCCAAGTTTTCTACCTCTAATGGAAAATTTCCAACTGGGTTTAAGCTGAAGAAGGCCAAGGAACATCTTTGTTTGTTAAATTCCACCGGAAAATGGAAGAAGAAGCTTTTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGTATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAACTTGTTCGATGAAGAAACGCGAACTTTGCTGCGGCATTTCAATGTGAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTCGTTATCCGAATCAGATCGGATGTCATCCATGGGGTGCACCAATGATTTTGGATCTGACACATCACAGTTGGATGGAATCGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGAAGAAAGTGCACATTCCAACGTTGAGCAGTGCCCAATTCCAACCGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACATATCTGTTCCATTTGCTACAGACCTATCGGTCTCTTTATTTTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTAAGATACTTTATAAGAAAGCACTGGAAGAGTGTCTATAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTAATAGCGCTCCAGAAAATATTTGGTTTCCATCTGAAATTGTGGAACCAGAAACATCCGAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTACGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCAGGGAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTGTTTGGGATCATCGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCCATTTTAAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAGTTTAACGTAAGCATGAACCATGTTCATGCATTGGCTGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACAGCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAGAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAACCCAGAAAATTTGGACCCTGCACCAATACAAGATGAATATGCACCCGTCATATTTTCTCAAGAAACAGTCGCTCATATAGTTTCTATTGACATGATGTCTGGAAAAGAAGATCGTGAGAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAACATTGACCTCCCACCAGATGCTACTCCCGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGCAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTCATCATTACCTTGCTGGTTGGCCATATTTTTCATGCAGCCATAAGTCGGATATCAAAAGTGGAGAATGACTATCACAAGATGATGGGGCTTAAAAGTCGTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTTGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCGGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGATAATGTTCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCGGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGCAATTCAGTCAAGTTTACTCATAAGATGGGGCACATATTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCACCTACATAGTTGGAGATACATCAAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTTCAGCAGGACAGATGCGGTGGAGGAACCCAAAACTATTAGAATACTCGTGACTGTTGAGGATACAGGCATAGGAATTCCCCAAGACGCACAAAACCGGATTTTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCACGGACATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAGCGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAACCTGGTATTGGTAGCACGTTTTCATTTACAGTTTCTTTCCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCCACAGTATGATCTGGGTGTTTTGGAGTTCCAGGGGTTAAGAGCATTAATAATAGATAATAGCAGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTCGATATAGCTCTGAGTGCGGAATCTGCTTATCAATATCTATCTAATACTTCCAACACAAGAGCATCGACACGATTAGCCATGATTCTTATAGACAAAGACATTTGGGACAAGAAAGTGGGTCTAAAATTCCATCTTTTGTTTAAAGAGCATGTGGATAGAAGTGTGACAAATCTCCAGATGAATACTCCAAAGCTCTTTCTCTTGGCAAACCCCATTAGCTCCAATGAGCTGAATGAACTTAAATCTTCTGGTCATGTAAATAATGTATTAATTAAACCTCTTCAGTTAAACATGTTGGTTGGTTGCTTCCGCGAAGCCTTTGGGATCGAGAAGAGGAATCAAGTAGTAATTAAAAGACCATCTACTCTTAAGAATCTGCTGAAAAATAAGCATATTTTGGTTGTGGATGACAATGCGGTAAACAGAAGGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTTTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTACGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGGGGTGAATACGAAAATTACATCAGGAGAAGTGTCAACTGAGGAGAATAGAGTCCATTGGCACACACCCATATTCGCTATGACTGCAGATTTAATTCAGGCTATGAATGAAGAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTTTTTTGAGACTACTTGA 3786 41.86 MWRGCSGGAGVFLKLLRCLLRMSLSSKFSTSNGKFPTGFKLKKAKEHLCLLNSTGKWKKKLFCLWIFAVVIVLSSWFSLRSYNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASSLSESDRMSSMGCTNDFGSDTSQLDGIACALRLLYWEQDLHKQYVWVEESAHSNVEQCPIPTEKIPENSDQLFSEDISVPFATDLSVSLFSTGNQLCGKIIEQAGVLRYFIRKHWKSVYSLLIGCFWVLLGVIALQKIFGFHLKLWNQKHPKPNQPLVHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVFGIIGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCNPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNIDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRISKVENDYHKMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFARTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKMGHILVSVHLADEVRGPVDFMDIVLRQGTYIVGDTSNNSCTTFSGLPVVDRWKSWEDFKKFSRTDAVEEPKTIRILVTVEDTGIGIPQDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRPQYDLGVLEFQGLRALIIDNSSIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTRLAMILIDKDIWDKKVGLKFHLLFKEHVDRSVTNLQMNTPKLFLLANPISSNELNELKSSGHVNNVLIKPLQLNMLVGCFREAFGIEKRNQVVIKRPSTLKNLLKNKHILVVDDNAVNRRVAEGALKKYGAVVTCVKSGKDAVAFLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGVNTKITSGEVSTEENRVHWHTPIFAMTADLIQAMNEECLKCGMDGYVAKPFEEEQLYSALACFFETT 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7969236 7979714 - Tan0020080.3 Tan05g0970 752278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0970 1261 Pfam His Kinase A (phospho-acceptor) domain 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan05g0970 1261 SMART CHASE_2 374 573 IPR006189 -
Tan05g0970 1261 FunFam Histidine kinase 4 378 605 - -
Tan05g0970 1261 ProSiteProfiles CHASE domain profile. 374 598 IPR006189 -
Tan05g0970 1261 SMART REC_2 1122 1254 IPR001789 GO:0000160(InterPro)
Tan05g0970 1261 Gene3D CHASE domain 378 605 IPR042240 -
Tan05g0970 1261 ProSiteProfiles Response regulatory domain profile. 1123 1258 IPR001789 GO:0000160(InterPro)
Tan05g0970 1261 PANTHER TWO-COMPONENT HISTIDINE KINASE 301 1256 IPR050956 -
Tan05g0970 1261 ProSiteProfiles Histidine kinase domain profile. 666 943 IPR005467 -
Tan05g0970 1261 CDD REC_hyHK_CKI1_RcsC-like 1124 1254 - -
Tan05g0970 1261 FunFam Histidine kinase 4 631 722 - -
Tan05g0970 1261 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 648 725 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan05g0970 1261 SUPERFAMILY CheY-like 962 1099 IPR011006 -
Tan05g0970 1261 Gene3D - 962 1113 - -
Tan05g0970 1261 Gene3D - 628 722 - -
Tan05g0970 1261 Pfam Response regulator receiver domain 1124 1254 IPR001789 GO:0000160(InterPro)
Tan05g0970 1261 Gene3D - 1116 1260 - -
Tan05g0970 1261 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 713 939 IPR036890 -
Tan05g0970 1261 SMART HKATPase_4 771 943 IPR003594 -
Tan05g0970 1261 Gene3D - 84 126 - -
Tan05g0970 1261 Gene3D - 325 377 - -
Tan05g0970 1261 ProSiteProfiles Response regulatory domain profile. 967 1099 IPR001789 GO:0000160(InterPro)
Tan05g0970 1261 SMART HisKA_10 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan05g0970 1261 CDD HATPase_EvgS-ArcB-TorS-like 776 939 - -
Tan05g0970 1261 Pfam CHASE domain 377 571 IPR006189 -
Tan05g0970 1261 CDD HisKA 659 720 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan05g0970 1261 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan05g0970 1261 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan05g0970 1261 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan05g0970 1261 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan05g0970 1261 SUPERFAMILY CheY-like 1120 1255 IPR011006 -
Tan05g0970 1261 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 867 941 IPR003594 -
Tan05g0970 1261 Gene3D - 723 945 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0968 Tan-Chr5:7969236 Tan05g0970 Tan-Chr5:7969236 0.00E+00 dispersed
Tan05g0970 Tan-Chr5:7969236 Tan06g1521 Tan-Chr6:21733151 0.00E+00 dispersed
Tan05g0969 Tan-Chr5:7969236 Tan05g0970 Tan-Chr5:7969236 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27475 PF03924 CHASE 2.60E-34 CL0165 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0970 K14489 - csv:101221294 2224.51