Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0985 ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACCGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTGGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGAGAAATGGAAGGGGAAAAGAGCACTATGGGAAGACAAGGGGAGAAGGACGGTGGTGGTAGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGCCGGCGGCGGCGGATTTAACGGAGTGGGTGGAATGTACGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCGGCGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 618 56.15 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGSGGGPGGSGANGGGGVNPGTGGGAGGGGFNGVGGMYGGMMMMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8191785 8193745 + Tan0006009.1 Tan05g0985 752293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0985 205 MobiDBLite consensus disorder prediction 1 21 - -
Tan05g0985 205 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Tan05g0985 205 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Tan05g0985 205 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Tan05g0985 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Tan05g0985 205 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982(InterPro)
Tan05g0985 205 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982(InterPro)
Tan05g0985 205 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
Tan05g0985 205 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g0985 205 MobiDBLite consensus disorder prediction 114 148 - -
Tan05g0985 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan05g0985 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1324 Tan-Chr1:13016907 Tan05g0985 Tan-Chr5:8191785 1.60E-46 dispersed
Tan01g1853 Tan-Chr1:19790320 Tan05g0985 Tan-Chr5:8191785 5.80E-48 dispersed
Tan05g0985 Tan-Chr5:8191785 Tan08g1925 Tan-Chr8:71507496 2.20E-44 dispersed
Tan05g0985 Tan-Chr5:8191785 Tan08g1924 Tan-Chr8:71507496 2.20E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27477 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0985 K08065 - csv:101219076 255.758