Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0995 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGAGTGATCCTTGTGAATACAGCCCTATCAATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCTACACTACCATCGTCACCAGATATCATGGAGAATGCTCCTGAAACCATAGAATTCCGTCTTAATCCGAATGGAAGTTACATCGAAGAGTTCCGCAGTAGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTTGAACACGACTGCTCAGTCTGCCTAACCCATTTTGAACCTGAATCAGAGATAAACCATTTATCCTGTGGCCATCTCTTCCACAGTGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTCTGTCGAACTCCATTAATGCCCCCCGAAGAAGAGACAGCTTCCTGCTTCTGGTGA 468 48.72 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDIMENAPETIEFRLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTHFEPESEINHLSCGHLFHSVCLEKWLDYWNLTCPLCRTPLMPPEEETASCFW 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8309836 8311668 - Tan0021598.2 Tan05g0995 752303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0995 155 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Tan05g0995 155 PANTHER - 1 155 IPR044249 -
Tan05g0995 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 146 IPR013083 -
Tan05g0995 155 SMART ring_2 98 139 IPR001841 -
Tan05g0995 155 SUPERFAMILY RING/U-box 87 146 - -
Tan05g0995 155 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0512 Tan-Chr2:4608175 Tan05g0995 Tan-Chr5:8309836 6.10E-55 dispersed
Tan05g0994 Tan-Chr5:8309836 Tan05g0995 Tan-Chr5:8309836 2.20E-89 tandem
Tan05g0995 Tan-Chr5:8309836 Tan05g0996 Tan-Chr5:8309836 2.20E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0995 K16285 - csv:101216645 305.449