Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0997 ATGGGTGTGATGTGTGATTTTTGTGGGACTCAAAGGTCAATGGTTTGCTGCCGATCTGATGCTGCTTGTTTATGTTTATCGTGTGATCGTAATGTCCACTCAGCTAATGCGTTGTCGAGGCGCCATTCAAGAACGCTGTTGTGTGAAAGATGCCATTTGCAACCTGGTGCAGTAAGATGTATTGAAGAGAGGGTTACTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCATCACACAAGAGGCAAACGATCAATTGTTACTCTGGTTGCCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCTTCTGTAAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTGCCTGGAGCCCTGAGGATAATAACGCCGGTCAAAGAATGCAAGCCACTGATGTTTGCACCAGGGAAAAGTCTAATGTTTTGGTTGGATCATCTCCACTCACTTCAGATCAACCACTCCAATTGGCTAATATGACTATACCCAAGTTTTGCTGTCCTGGAACAAAACTTGCCGGACTCTGTGGTGAGGATGATGACATCTACAAGGAATTTGATATGGATGAAATAGATTTGAATCTCGAAAATTATGAGGAGCTGTTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCAATAATGGCCTTTTTGAGGAAAAAGGCCTGTCTTTTGAAGATTCAGTTTGGCACAGTGCAGTTGCTGCAGAGGGGTCTTCGATTGGAGTGGTGAAACCAATGCAGCCAGGTTGCAGCAATGGGGCATCTGCTGACTCAATGATGAGTACTAAAACTGAACCGATTCTCTGTTTTAATTCAAGGCAAGCACAATCAGGTATGTCCTTTTCTGGCCTTACTGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGAACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCCAGTTTGAGAAAAGAGTGAGATACGCCACTCGAAAAGCGAGAGCCGATGTCAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGCTGAGCCAGACTAGAAGCTGCTGA 1170 45.47 MGVMCDFCGTQRSMVCCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCHLQPGAVRCIEERVTLCQNCDWTGHGTSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKEMGLMSIAWSPEDNNAGQRMQATDVCTREKSNVLVGSSPLTSDQPLQLANMTIPKFCCPGTKLAGLCGEDDDIYKEFDMDEIDLNLENYEELFGMSLNHSEELFNNGLFEEKGLSFEDSVWHSAVAAEGSSIGVVKPMQPGCSNGASADSMMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKTRQFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8320888 8325257 - Tan0008886.1 Tan05g0997 752305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0997 389 ProSiteProfiles CCT domain profile. 332 374 IPR010402 GO:0005515(InterPro)
Tan05g0997 389 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 Pfam CCT motif 332 374 IPR010402 GO:0005515(InterPro)
Tan05g0997 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 379 - -
Tan05g0997 389 SMART bboxneu5 48 86 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 CDD Bbox1_BBX-like 5 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0854 Tan-Chr5:6697492 Tan05g0997 Tan-Chr5:8320888 6.50E-46 dispersed
Tan05g0997 Tan-Chr5:8320888 Tan10g1360 Tan-Chr10:16812407 4.20E-12 dispersed
Tan04g0803 Tan-Chr4:6838085 Tan05g0997 Tan-Chr5:8320888 2.80E-13 transposed
Tan02g0515 Tan-Chr2:4629600 Tan05g0997 Tan-Chr5:8320888 1.30E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27478 PF06203 CCT 2.20E-15 CL0281 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0997 - - - 0.0