Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0997 ATGGGTGTGATGTGTGATTTTTGTGGGACTCAAAGGTCAATGGTTTGCTGCCGATCTGATGCTGCTTGTTTATGTTTATCGTGTGATCGTAATGTCCACTCAGCTAATGCGTTGTCGAGGCGCCATTCAAGAACGCTGTTGTGTGAAAGATGCCATTTGCAACCTGGTGCAGTAAGATGTATTGAAGAGAGGGTTACTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCATCACACAAGAGGCAAACGATCAATTGTTACTCTGGTTGCCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCTTCTGTAAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTGCCTGGAGCCCTGAGGATAATAACGCCGGTCAAAGAATGCAAGCCACTGATGTTTGCACCAGGGAAAAGTCTAATGTTTTGGTTGGATCATCTCCACTCACTTCAGATCAACCACTCCAATTGGCTAATATGACTATACCCAAGTTTTGCTGTCCTGGAACAAAACTTGCCGGACTCTGTGGTGAGGATGATGACATCTACAAGGAATTTGATATGGATGAAATAGATTTGAATCTCGAAAATTATGAGGAGCTGTTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCAATAATGGCCTTTTTGAGGAAAAAGGCCTGTCTTTTGAAGATTCAGTTTGGCACAGTGCAGTTGCTGCAGAGGGGTCTTCGATTGGAGTGGTGAAACCAATGCAGCCAGGTTGCAGCAATGGGGCATCTGCTGACTCAATGATGAGTACTAAAACTGAACCGATTCTCTGTTTTAATTCAAGGCAAGCACAATCAGGTATGTCCTTTTCTGGCCTTACTGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGAACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCCAGTTTGAGAAAAGAGTGAGATACGCCACTCGAAAAGCGAGAGCCGATGTCAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGCTGAGCCAGACTAGAAGCTGCTGA 1170 45.47 MGVMCDFCGTQRSMVCCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCHLQPGAVRCIEERVTLCQNCDWTGHGTSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKEMGLMSIAWSPEDNNAGQRMQATDVCTREKSNVLVGSSPLTSDQPLQLANMTIPKFCCPGTKLAGLCGEDDDIYKEFDMDEIDLNLENYEELFGMSLNHSEELFNNGLFEEKGLSFEDSVWHSAVAAEGSSIGVVKPMQPGCSNGASADSMMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKTRQFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8320888 8325257 - Tan0008886.1 Tan05g0997 752305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0997 389 ProSiteProfiles CCT domain profile. 332 374 IPR010402 GO:0005515(InterPro)
Tan05g0997 389 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 Pfam CCT motif 332 374 IPR010402 GO:0005515(InterPro)
Tan05g0997 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 379 - -
Tan05g0997 389 SMART bboxneu5 48 86 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Tan05g0997 389 CDD Bbox1_BBX-like 5 47 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0997 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0854 Tan-Chr5:6697492 Tan05g0997 Tan-Chr5:8320888 6.50E-46 dispersed
Tan05g0997 Tan-Chr5:8320888 Tan10g1360 Tan-Chr10:16812407 4.20E-12 dispersed
Tan04g0803 Tan-Chr4:6838085 Tan05g0997 Tan-Chr5:8320888 2.80E-13 transposed
Tan02g0515 Tan-Chr2:4629600 Tan05g0997 Tan-Chr5:8320888 1.30E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2785 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 6.6e-84 308.5
Tan09g1648 . 20 366 C2C2-CO-like Transcription Factor Family AT5G24930 51.5 4.9e-55 212.6
Tan09g1648 . 5 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 7.4e-64 241.9
Tan02g2785 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.5e-53 207.6
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT3G07650 57.1 1.5e-91 334.0
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 54.8 4.5e-88 322.4
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan02g0764 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.0 3.6e-52 203.0
Tan05g1250 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 52.1 1.4e-48 191.0
Tan01g0919 . 1 296 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 8.1e-78 288.1
Tan01g1213 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.6e-56 215.3
Tan03g2053 . 1 120 C2C2-CO-like Transcription Factor Family AT2G21320 75.0 1.5e-49 193.4
Tan01g1214 . 2 152 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 4.0e-39 158.7
Tan01g1213 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.2e-57 220.3
Tan03g2053 . 1 113 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 1.0e-48 190.7
Tan01g1214 . 1 153 C2C2-CO-like Transcription Factor Family AT4G38960 58.2 8.6e-40 161.0
Tan02g0764 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.4 1.6e-54 210.3
Tan02g2035 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 3.6e-46 182.6
Tan05g1250 . 1 209 C2C2-CO-like Transcription Factor Family AT4G39070 53.0 4.0e-45 179.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27478 PF06203 CCT 2.20E-15 CL0281 Tan TR