Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1001 ATGGATGGATTTAGGGGTAACGACGTCAAACAAAGCGTTGAAAGGCATTCCCACGCCGAGATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAGACCCGAAAACCTGGTAAATGA 1374 42.5 MDGFRGNDVKQSVERHSHAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKTRKPGK 457
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8413889 8420044 + Tan0012615.1 Tan05g1001 752309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1001 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 445 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan05g1001 457 NCBIfam calcium/proton exchanger 92 440 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan05g1001 457 Gene3D - 138 272 IPR044880 -
Tan05g1001 457 Gene3D - 285 441 IPR044880 -
Tan05g1001 457 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1001 457 Pfam Sodium/calcium exchanger protein 299 439 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1001 457 FunFam Vacuolar cation/proton exchanger 285 441 - -
Tan05g1001 457 FunFam Vacuolar cation/proton exchanger 139 278 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1872 Tan-Chr1:20010468 Tan05g1001 Tan-Chr5:8413889 1.10E-158 dispersed
Tan03g0788 Tan-Chr3:64009293 Tan05g1001 Tan-Chr5:8413889 7.80E-95 dispersed
Tan05g1001 Tan-Chr5:8413889 Tan05g1007 Tan-Chr5:8413889 5.30E-240 dispersed
Tan05g1001 Tan-Chr5:8413889 Tan05g1002 Tan-Chr5:8413889 2.70E-252 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1001 K07300 - csv:101215915 808.905