Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1002 ATGGATGGATTTAGGGGTAACGACGTCAAACAAAGCGTTGAAAGGCATTCCCACGCCGAGATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAGACCCGAAAACCTGGTAAATGA 1374 42.5 MDGFRGNDVKQSVERHSHAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKTRKPGK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8413889 8420044 + Tan0012615.2 Tan05g1002 752310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1002 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 445 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan05g1002 457 NCBIfam calcium/proton exchanger 92 440 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan05g1002 457 Gene3D - 138 272 IPR044880 -
Tan05g1002 457 Gene3D - 285 441 IPR044880 -
Tan05g1002 457 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1002 457 Pfam Sodium/calcium exchanger protein 299 439 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1002 457 FunFam Vacuolar cation/proton exchanger 285 441 - -
Tan05g1002 457 FunFam Vacuolar cation/proton exchanger 139 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1002 Tan-Chr5:8413889 Tan05g1007 Tan-Chr5:8413889 5.30E-240 dispersed
Tan05g1001 Tan-Chr5:8413889 Tan05g1002 Tan-Chr5:8413889 2.70E-252 tandem
Tan05g1002 Tan-Chr5:8413889 Tan05g1003 Tan-Chr5:8413889 3.50E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1002 K07300 - csv:101215915 808.905