Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1002 | ATGGATGGATTTAGGGGTAACGACGTCAAACAAAGCGTTGAAAGGCATTCCCACGCCGAGATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAGACCCGAAAACCTGGTAAATGA | 1374 | 42.5 | MDGFRGNDVKQSVERHSHAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKTRKPGK | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8413889 | 8420044 | + | Tan0012615.2 | Tan05g1002 | 752310 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1002 | 457 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 62 | 445 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Tan05g1002 | 457 | NCBIfam | calcium/proton exchanger | 92 | 440 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Tan05g1002 | 457 | Gene3D | - | 138 | 272 | IPR044880 | - | |
Tan05g1002 | 457 | Gene3D | - | 285 | 441 | IPR044880 | - | |
Tan05g1002 | 457 | Pfam | Sodium/calcium exchanger protein | 109 | 265 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan05g1002 | 457 | Pfam | Sodium/calcium exchanger protein | 299 | 439 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan05g1002 | 457 | FunFam | Vacuolar cation/proton exchanger | 285 | 441 | - | - | |
Tan05g1002 | 457 | FunFam | Vacuolar cation/proton exchanger | 139 | 278 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1002 | Tan-Chr5:8413889 | Tan05g1007 | Tan-Chr5:8413889 | 5.30E-240 | dispersed | |
Tan05g1001 | Tan-Chr5:8413889 | Tan05g1002 | Tan-Chr5:8413889 | 2.70E-252 | tandem | |
Tan05g1002 | Tan-Chr5:8413889 | Tan05g1003 | Tan-Chr5:8413889 | 3.50E-183 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1002 | K07300 | - | csv:101215915 | 808.905 |