Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1003 ATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGTAAGTGCTTGCCCTTATATGTGCCTTAACAAAATGATTTGTGAGGTCCTTTTCTCTAATCATGTGTTGTGTAGGACATTTCTTTGGGAGTCGCAATAG 1116 41.94 MGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLVSACPYMCLNKMICEVLFSNHVLCRTFLWESQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8413889 8420044 + Tan0012615.3 Tan05g1003 752311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1003 371 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 44 340 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan05g1003 371 FunFam Vacuolar cation/proton exchanger 119 258 - -
Tan05g1003 371 Gene3D - 117 261 IPR044880 -
Tan05g1003 371 NCBIfam calcium/proton exchanger 72 339 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan05g1003 371 Pfam Sodium/calcium exchanger protein 89 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1003 371 Pfam Sodium/calcium exchanger protein 279 356 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1003 Tan-Chr5:8413889 Tan05g1005 Tan-Chr5:8413889 2.20E-204 dispersed
Tan05g1002 Tan-Chr5:8413889 Tan05g1003 Tan-Chr5:8413889 3.50E-183 tandem
Tan05g1003 Tan-Chr5:8413889 Tan05g1004 Tan-Chr5:8413889 2.20E-204 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1003 K07300 - csv:101215915 603.979