Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g1009 | ATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATTGTTGTCGCCTTCATGTTGCAGGTTTGCTGCTTCGGCCTTCTCTTATTTTGTTTAAGGTATTGTGGATAA | 1236 | 42.23 | MGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQVCCFGLLLFCLRYCG | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8413889 | 8420044 | + | Tan0012615.9 | Tan05g1009 | 752317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g1009 | 411 | Gene3D | - | 265 | 409 | IPR044880 | - | |
Tan05g1009 | 411 | Gene3D | - | 118 | 264 | IPR044880 | - | |
Tan05g1009 | 411 | FunFam | Vacuolar cation/proton exchanger | 265 | 408 | - | - | |
Tan05g1009 | 411 | Pfam | Sodium/calcium exchanger protein | 279 | 395 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan05g1009 | 411 | Pfam | Sodium/calcium exchanger protein | 89 | 245 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan05g1009 | 411 | FunFam | Vacuolar cation/proton exchanger | 119 | 258 | - | - | |
Tan05g1009 | 411 | NCBIfam | calcium/proton exchanger | 72 | 393 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Tan05g1009 | 411 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 44 | 396 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g1009 | Tan-Chr5:8413889 | Tan05g1011 | Tan-Chr5:8413889 | 3.30E-225 | dispersed | |
Tan05g1008 | Tan-Chr5:8413889 | Tan05g1009 | Tan-Chr5:8413889 | 5.90E-225 | tandem | |
Tan05g1009 | Tan-Chr5:8413889 | Tan05g1010 | Tan-Chr5:8413889 | 1.10E-215 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g1009 | K07300 | - | csv:101215915 | 716.072 |