Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1010 ATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAGACCCGAAAACCTGGTAAATGA 1314 42.16 MGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKTRKPGK 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8413889 8420044 + Tan0012615.10 Tan05g1010 752318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1010 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 44 425 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan05g1010 437 FunFam Vacuolar cation/proton exchanger 265 421 - -
Tan05g1010 437 Pfam Sodium/calcium exchanger protein 89 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1010 437 Pfam Sodium/calcium exchanger protein 279 419 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1010 437 NCBIfam calcium/proton exchanger 72 420 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan05g1010 437 Gene3D - 118 252 IPR044880 -
Tan05g1010 437 Gene3D - 265 421 IPR044880 -
Tan05g1010 437 FunFam Vacuolar cation/proton exchanger 119 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1007 Tan-Chr5:8413889 Tan05g1010 Tan-Chr5:8413889 3.00E-240 dispersed
Tan05g1010 Tan-Chr5:8413889 Tan05g1012 Tan-Chr5:8413889 1.10E-215 dispersed
Tan05g1009 Tan-Chr5:8413889 Tan05g1010 Tan-Chr5:8413889 1.10E-215 tandem
Tan05g1010 Tan-Chr5:8413889 Tan05g1011 Tan-Chr5:8413889 1.10E-215 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1010 K07300 - csv:101215915 778.859