Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1013 ATGGATGGATTTAGGGGTAACGACGTCAAACAAAGCGTTGAAAGGCATTCCCACGCCGAGATGGGATCATTAGGCGAGAAAACCATACTAGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGGGACCTTTGCATTCTTCTTCATTGGCTGGTGGTTCGCAGAAATTTTGTTACAGTAACATGAAGAACAGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTGGCAATGGTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGAGAAGAGGAATGATAAGAGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGTGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTCCAGTTGAAAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGTGGACACTGAAGGGAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTAGTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGTAAGTGCTTGCCCTTATATGTGCCTTAACAAAATGATTTGTGAGGTCCTTTTCTCTAATCATGTGTTGTGTAGGACATTTCTTTGGGAGTCGCAATAG 1176 42.35 MDGFRGNDVKQSVERHSHAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGPLHSSSLAGGSQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAMVVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDTEGNSDDEEAPEISMWESISWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLVSACPYMCLNKMICEVLFSNHVLCRTFLWESQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8413889 8420044 + Tan0012615.13 Tan05g1013 752321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1013 391 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 360 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan05g1013 391 Gene3D - 138 285 IPR044880 -
Tan05g1013 391 FunFam Vacuolar cation/proton exchanger 139 278 - -
Tan05g1013 391 Pfam Sodium/calcium exchanger protein 299 376 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1013 391 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1013 391 NCBIfam calcium/proton exchanger 92 359 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1005 Tan-Chr5:8413889 Tan05g1013 Tan-Chr5:8413889 2.20E-204 dispersed
Tan05g1006 Tan-Chr5:8413889 Tan05g1013 Tan-Chr5:8413889 2.00E-216 dispersed
Tan05g1013 Tan-Chr5:8413889 Tan08g2132 Tan-Chr8:73125304 4.00E-63 dispersed
Tan05g1012 Tan-Chr5:8413889 Tan05g1013 Tan-Chr5:8413889 1.80E-183 tandem
Tan05g1013 Tan-Chr5:8413889 Tan05g1014 Tan-Chr5:8413889 5.10E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1013 K07300 - csv:101215915 634.024