Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1058 ATGATAAAAGAATTTGGAGCGAAAGTGACTGGAAATAACAATGGTTCGAGTCATTGTTCATCGACTTCTAATGGAGGTCGAGATGAATCTGAAGATGTGGTTAAGGATTTGATCGAAGCGAACGAGTTAATCGAAGCCATTGGGGGGTTTTCTGGGTTTCGAAAGACTCAATCGAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTCGTGCCATTGTTGGAGGAGATTCGGGACCTTCATGATATGGTTCCTGCTGAGGCTTTGAGTTGCCATCTTGGTCATTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGTCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAATGAGGCTGTGATGGCGAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCTCTTGATGGGATGCCTTATGATGAGCTTGGAGTTTCAGTTGAATTGAAAGAACAAGTCGAGCTCATGTCTACGCAACTCAAAAGAGCAAAGTGTCGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGCGAGGAATGCTGACCCTGTTATACTCGAAAGATTGGCAAATAAATTGGAACTACGTAAAATTGCAGATTTGGAAGCAGAAACCATAGCTGTTCAAAAATTAGTTAGGCGTAGAGGTGTACCGAATTCTGAAAGTCTCCAGCAAATTTTAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACACTAATGTTGCTCCTGATGGTCCTGTTGCAACGAAATGTCTGAAACGATGTCAGTCTACATTAATCCCTCATGAATTCCTCTGTCCAATTACCTTAGAAATCATGTCAGATCCTGTCATTGTGGCAACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAATCACCGGACCTGCCCGAAAACAGGACAAACTTTGGTGCACTTGTCACTAGCTCCAAATTATGCCCTCAAGAATCTCATTGTGCAGTGGTGTCAAAAGTATGACTATGAATTACCGAAAAAGGAAGTGGTTGGTGGATTGAGTAACACTCCACCCGAACTCGCTCAGGAAATCTCCTCCTTAGTCTGCAATCTATCATCAAGTCAGTTGAATGTCCAGAGAGAGGCTATCATCAAGATCCGGGTCCTCGCCAAAGAGAACCCCGAGAACAGAGTTTGGATCGCGAATAGCGGAGTCATCCCTCCATTGGTTAAACTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACTGTGACCGCTCTTTTGAACTTGTCTATCGACGACGCAAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAGATCCTGCAGCATGGAACAGAGGAGGCAAAGGAGAATTCTGCTGCTGCCTTATTTAGTTTGTCAATGTTAGATGAAAACAAGGTTCTGATCGGATCTCTTAATGGAATCCCGCCGTTAGTAGCTCTTCTTCGAGACGGTACAATCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTCAACCTGTCACTAAATCAATCAAACAAGTCTCGAGCCATCAAAGCCGGTATCATCCTGCCCCTTCTCTATTTACTCGAGGATAAAAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTCACATCAAATCCCGAGGGACGCGCCGAGATCAGTAACAACTCTTTCATCGGAATTCTAGTCAACATCATAAAAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCATTGCTTCTAGAGCTGGGACTAAACAATTCACCTTCCATTTTGGTTGCACTGCAATTTGGTGTGTATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAAACTCACTTTTGCAGTATATGATCAAGTGTGAACACATTCCCTGA 1956 42.79 MIKEFGAKVTGNNNGSSHCSSTSNGGRDESEDVVKDLIEANELIEAIGGFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSCHLGHLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGMPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDARNADPVILERLANKLELRKIADLEAETIAVQKLVRRRGVPNSESLQQILDLLCKFKQIAGMDTNVAPDGPVATKCLKRCQSTLIPHEFLCPITLEIMSDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLIVQWCQKYDYELPKKEVVGGLSNTPPELAQEISSLVCNLSSSQLNVQREAIIKIRVLAKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLNGIPPLVALLRDGTIRGKKDAATALFNLSLNQSNKSRAIKAGIILPLLYLLEDKNLGMVDEALSILLLLTSNPEGRAEISNNSFIGILVNIIKDGTPKNKECATSLLLELGLNNSPSILVALQFGVYEHLVELTRCGTSRAQRKANSLLQYMIKCEHIP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8918421 8922231 - Tan0019267.1 Tan05g1058 752366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1058 651 CDD MLKL_NTD 59 142 - -
Tan05g1058 651 CDD RING-Ubox_PUB 278 330 IPR045210 -
Tan05g1058 651 FunFam RING-type E3 ubiquitin transferase 360 650 - -
Tan05g1058 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 350 IPR013083 -
Tan05g1058 651 FunFam RING-type E3 ubiquitin transferase 30 147 - -
Tan05g1058 651 SUPERFAMILY RING/U-box 277 351 - -
Tan05g1058 651 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1058 651 MobiDBLite consensus disorder prediction 9 27 - -
Tan05g1058 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Tan05g1058 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 Pfam U-box domain 277 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1058 651 SMART arm_5 400 440 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 SMART arm_5 441 481 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 SMART arm_5 523 563 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 SMART arm_5 482 522 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 SMART arm_5 606 646 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 Gene3D - 508 649 IPR011989 -
Tan05g1058 651 Gene3D - 354 507 IPR011989 -
Tan05g1058 651 FunFam RING-type E3 ubiquitin transferase 272 350 - -
Tan05g1058 651 PANTHER U BOX DOMAIN-CONTAINING 55 644 - -
Tan05g1058 651 SMART Ubox_2 280 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g1058 651 Gene3D - 35 145 IPR036537 GO:0007166(InterPro)
Tan05g1058 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 Coils Coil 152 172 - -
Tan05g1058 651 MobiDBLite consensus disorder prediction 7 30 - -
Tan05g1058 651 Pfam Armadillo/beta-catenin-like repeat 441 480 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515(InterPro)
Tan05g1058 651 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0377 Tan-Chr5:2751092 Tan05g1058 Tan-Chr5:8918421 5.00E-74 dispersed
Tan05g0378 Tan-Chr5:2751092 Tan05g1058 Tan-Chr5:8918421 5.00E-74 dispersed
Tan05g1058 Tan-Chr5:8918421 Tan05g2530 Tan-Chr5:76649712 1.10E-54 dispersed
Tan05g1058 Tan-Chr5:8918421 Tan01g2462 Tan-Chr1:31419204 2.00E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1058 - - - 0.0