Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1079 ATGCATTGTCACAGACATTTTCTTCCAAAAAAAGCTCGGGGCACACAACTCAAAACAGGAACATCTGTGAAACCAGTGAATGAGGAATTAGTAGAGGATAAGTCCAAGGATCTCGAAGTGACCGGGGACTCTATTCGTCGTAGGTTTCTTCAATTTTATGCTTCCCGCGGACACAAAGTTCTTCCCAGTGCTTCTTTGGTACCAGAAGATCCCACGGTTTTATTGACAATTGCAGGAATGCTTCAATTCAAGCCTATATTCCTTGGAAAGGTACCTAGACTGGTGCCTTGTGCTGCAACTTCACAAAGGTGCATACGTACAAATGATGTGGAGAATGTAGGTCGAACGGCTAGGCATCATACGTTCTTTGAGATGCTTGGAAACTTCAGTTTTGGTGATTACTTCAAGAAAGAAGCAATTAAGTGGGCATGGGAACTGACAACCATCGAATTTGGGTTGCCAGCCAACAGATTATGGATTAGTATATATGAAGAAGATGATGAAGCTTTTGCAATATGGCATGACGAGGTAGGTGTTCCAGTTGATCGTATAAAGAGGATGGGTGAGGATGACAATTTTTGGACTAGTGGCATCACGGGTCCATGTGGCCCATGCTCTGAGATTTATTATGATTTCCAACCTGAAAAGGGGTATTCTGATGTTGATTTGGGAGATGATACAAGGTTTATGGAGTTCTACAACTTAGTTTTCATGCAGTACAACAAAAAGGATGATGGGTCCCTCGAACCTTTGAAACAGAAAAATATAGATACAGGGCTTGGTTTAGAGCGCATGGCACGCATTCTCCAAAAAGTTCCAAATAATTATGAGACTGACTTGATCTACCCCATTATACAGAAGGCCTCAGAATTAGCAAATGTGACATATGACACTTCTGACAATCAGTCAAAAACAAACCTTAAAATCATTGGAGACCATATGCGTGCGATTGTATACCTGATATCTGATGGAGTCGTCCCATCCAATATTGGGAGAGGATATGTTGTCCGTAGGCTTATACGAAGAGTTGTTCGTACTGGTAGGCTGCTTGGAATAAAGGGGGATGGAAGAGGCAATATTGATGGTGCATTTACACCACTCATTGCAGAAAAGGTCATTGCATTAAGCTCCCACATTGACGAGGATGTGAAGGGTAGGGCATGCCGCATTCTTGAGGAACTGAAAAGGGAAGAATTTAGGTTTGTACAAACACTAGAGCGAGGGGAAAAGCTGCTTGAAGAAATGCTAGCTGATGCATTGGCAAGTGCTAAAGAGGATGGAAGGGTGCCTTGTTTGGCTGGTAAAGATGCATTTCTGTTGTACGATACATATGGGTTTCCAGTGGAGATTACCACAGAAGTTGCTCAAGAGCGTGGTGTTGTAGTTGATATGAAGGGGTTTGATATTGAAATGGAAAATCAGAGGCGACAATCTCAGGCTGCACATAATGCTGTCAAGCTGGAAGTTGGAGAAGGTGCAGATATCATGGAAAATATCTCTGACACAGAATTTCTTGGATATGATATGCTCTCTGCTAAAGCCATTGTGGAGAGTCTTATTGTGAATGGTACTTCTGTGTTACAGGTTTCAGAAGGAAATGATGTAGAAGTTTTGTTGAATCGGACACCTTTCTATGCGGAATCTGGTGGTCAGATTGGAGACCATGGTTTCATCTACATTTCAGAAGGTGAAAACAGCCACAATGTTATAGTGGAGGTAAAAGATGTACAAAAATCTGCGGGCAACATATTTGTTCACAAGGGTACCATCAAACAGGGAGTTCTAGAGGTTGGAAGAGAAGTAGAAGCAGAAGTAGATGGAAAGTTGAGGCAGGGAGCCAAGGTTCATCATACTGCTACGCATTTGCTACAATCTGCGCTTAAGAGGATTATTGGCCAAGAAACATCACAAGCTGGTTCCTTGGTTGCCTTCGACCGGCTCAGATTTGATTTCAACTACCACCGACCACTTGCTGACACTGAGATCTTAAAAATTGAAGAGTTGATCAATGATTGGATTGGAGGTGCAGTGCTTCTTCAAACTAAAGTGATGCCTCTTGCTGATGCCAAAAGAGCGGGGGCTATTGCTATGTTTGGAGAGAAGTATGGAGAAGAGGTACGTGTTGTTGAGGTTCCTGGTGTGTCAATGGAACTTTGTGGTGGGACTCATGTATTCAACACTTCAGAAATACGAGGCTTTAAAATAATCTCGGAGCAGGGTATTGCATCTGGCGTTAGGCGAATAGAGGCCGTGGCTGGTGATGCTTTCATTGAGTACGTTAATGCCAGAGACTGCCATATGAAGCGGCTGTGCACCATGCTCAAAGTAAAAGCTGAAGATGTTACAACCCGGGTAGAAAATCTCGTTGAGGAATTGCGGTTGGCGAGAAATGAGATCTCCAATTTGCGTGAAAAAACTGCAGTTTTTAAAGCATCAAGCATTGCTAATAAGGCATTTGTGGTTGGAACTTCAAAAGAGATCAGGGTACTAGTTGAATGTATGGATGATACCGACGCCGATTCACTGAAAGGTGCAGCTGAGTTCCTGATAGACAATCTTCAAGATCCAGCAGCTATTGTACTAGGCTCTTGTCCAGGCGAAGGAAAAGTGAGTTTAGTTGCAGCATTTACACCAACTGTTGTTAATCTAGGAGTACAGGCAGGGAAGTTCATAGGACCTATAGCTAAGTTGTGTGGTGGGGGAGGGGGTGGCAGACCCAATTTTGCTCAGGCAGGTGGAAGAAAGCCTGAGAACTTGTTGAATGCACTCGAAAACGCTCGATCTGAGCTCATCCGAATTCTATCTGAGAAGGCAAGCTAG 2820 43.33 MHCHRHFLPKKARGTQLKTGTSVKPVNEELVEDKSKDLEVTGDSIRRRFLQFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRLVPCAATSQRCIRTNDVENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWAWELTTIEFGLPANRLWISIYEEDDEAFAIWHDEVGVPVDRIKRMGEDDNFWTSGITGPCGPCSEIYYDFQPEKGYSDVDLGDDTRFMEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIYPIIQKASELANVTYDTSDNQSKTNLKIIGDHMRAIVYLISDGVVPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGRGNIDGAFTPLIAEKVIALSSHIDEDVKGRACRILEELKREEFRFVQTLERGEKLLEEMLADALASAKEDGRVPCLAGKDAFLLYDTYGFPVEITTEVAQERGVVVDMKGFDIEMENQRRQSQAAHNAVKLEVGEGADIMENISDTEFLGYDMLSAKAIVESLIVNGTSVLQVSEGNDVEVLLNRTPFYAESGGQIGDHGFIYISEGENSHNVIVEVKDVQKSAGNIFVHKGTIKQGVLEVGREVEAEVDGKLRQGAKVHHTATHLLQSALKRIIGQETSQAGSLVAFDRLRFDFNYHRPLADTEILKIEELINDWIGGAVLLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVFNTSEIRGFKIISEQGIASGVRRIEAVAGDAFIEYVNARDCHMKRLCTMLKVKAEDVTTRVENLVEELRLARNEISNLREKTAVFKASSIANKAFVVGTSKEIRVLVECMDDTDADSLKGAAEFLIDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVNLGVQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELIRILSEKAS 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9493660 9505071 - Tan0013114.1 Tan05g1079 752387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1079 939 Pfam DHHA1 domain 785 928 IPR003156 GO:0003676(InterPro)
Tan05g1079 939 Pfam tRNA synthetases class II (A) 45 608 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Tan05g1079 939 Hamap Alanine--tRNA ligase [alaS]. 41 934 IPR023033 GO:0004813(InterPro)
Tan05g1079 939 FunFam Alanine--tRNA ligase 820 930 - -
Tan05g1079 939 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 40 762 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Tan05g1079 939 FunFam Alanine--tRNA ligase 677 730 - -
Tan05g1079 939 Coils Coil 778 805 - -
Tan05g1079 939 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 706 749 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Tan05g1079 939 PANTHER ALANYL-TRNA SYNTHETASE 36 928 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005829(PANTHER)|GO:0006419(PANTHER)
Tan05g1079 939 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 277 506 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Tan05g1079 939 Hamap Probable alanine--tRNA ligase, chloroplastic. 32 936 IPR027522 GO:0009507(InterPro)
Tan05g1079 939 Gene3D - 616 751 - -
Tan05g1079 939 Gene3D Bira Bifunctional Protein; Domain 2 40 273 IPR045864 -
Tan05g1079 939 SMART tRNA_SAD_4 706 749 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Tan05g1079 939 NCBIfam alanine--tRNA ligase 45 913 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Tan05g1079 939 FunFam Alanine--tRNA ligase, cytoplasmic 606 763 - -
Tan05g1079 939 SUPERFAMILY Translation proteins 501 605 IPR009000 -
Tan05g1079 939 SUPERFAMILY Class II aaRS and biotin synthetases 41 276 IPR045864 -
Tan05g1079 939 Gene3D - 492 605 - -
Tan05g1079 939 Gene3D - 753 815 - -
Tan05g1079 939 FunFam Alanine--tRNA ligase 39 273 - -
Tan05g1079 939 SUPERFAMILY ThrRS/AlaRS common domain 605 763 IPR018163 GO:0000166(InterPro)
Tan05g1079 939 Gene3D - 677 730 - -
Tan05g1079 939 FunFam Probable alanine--tRNA ligase, chloroplastic 491 605 - -
Tan05g1079 939 CDD AlaRS_core 43 272 - -
Tan05g1079 939 Gene3D - 822 930 - -
Tan05g1079 939 PRINTS Alanyl-tRNA synthetase signature 230 241 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Tan05g1079 939 PRINTS Alanyl-tRNA synthetase signature 108 119 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Tan05g1079 939 PRINTS Alanyl-tRNA synthetase signature 257 270 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Tan05g1079 939 PRINTS Alanyl-tRNA synthetase signature 308 324 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Tan05g1079 939 PRINTS Alanyl-tRNA synthetase signature 332 345 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1079 K01872 - - csv:101206513 1710.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2360 Tan-Chr4:82096773 Tan05g1079 Tan-Chr5:9493660 3.20E-109 dispersed
Tan04g2361 Tan-Chr4:82096773 Tan05g1079 Tan-Chr5:9493660 8.50E-110 dispersed
Tan05g1079 Tan-Chr5:9493660 Tan05g1081 Tan-Chr5:9493660 0.00E+00 dispersed
Tan05g1079 Tan-Chr5:9493660 Tan05g1080 Tan-Chr5:9493660 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g254 . . . . . . . Bma12g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0645 . . . . . . . . Bhi10g01224 Tan05g1079 Cmetu11g1332 . Hepe08g0326 . . . . . . . . . . . . Cme11g01236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006559 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 38