Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1092 ATGGATTTCTCCCTCAAGTCTTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGTGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAACCGGATAATCTTCACCGGAATCACTCCATTATGGCGCCGTCCGATGCATCTGACCGGAGAGAGGTCATCGTCAAGATCGATCAGTCTGATGCTTCGAGTAATGCATCATCGAGAGCGGTGGAGTCGGTGAACTCCAATGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATGGTAGACGGAATAATGGTGAAGGTAGTAATGGCGATGGTAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAGGATCCGCCTTCGAAGCTTATTGGACAGTTTCTGCACAAGCAGAAGGCGTCGGGAGAGATGTCGTTGGATATGGATATGGAAATGTTGGAACTACCACTTGATAAGACTCTGCCTCCGGTGGCGGAATCTCCGATGCGACGGAGCTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAACGATTCGATTCGAAGACGGCATAGAGACTCGCCGGCCGATGAAGAACATAGAGGAGGACAACAATCGCAGAAGGGTGATCGTCGAGCTTATGGCAATGGTCATGATGATAGTGGTGATGAGGTTGTGAGATGCACATCTAATTCTTCGTTTCAGAGAAGCGTATCGTTCCAAAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCCAGACTGTTGGACCCGCCTGAACAGCCGGACCGGAGGTCAGGGCGAGTACCAAAATCAGGGCAAATGCGCTCGGGATTGTTGTCGAAAGCTTTGGATGAAGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCAGATGAGTATAAGAAGGCTAATCTTGGTGTTCTTACTCTGTTACAATGGGCGAGTTTGATTTTGATCATCGCAGCATTAGTTTGCACTCTGACAATCCCTTACTGGAGGCAAAAGAATCTATGGAAGCTTAAGTTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGGTTTCTGGATGGGGGATCAGGATAATCGTCTTCTTCATCGAGAGAAACTTTCTACTGCGTAAAAGGGTTCTATACTTCGTTTATGGGGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTAGGTCTTGTTTTAATTGCTTGGAACTTTCTGTTCGATGACAAAGTTCAGAGAGAAGTAAAAAGCAATGCCCTCGAGTATGTGACTAAAGTTCTTGTATGCCTTCTTGTAACCACTTTGGTTTGGCTGGTGAAAACGCTAATGGTGAAGGTTCTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCACTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTATAAAGTTACAGAATGCAGGGGCCACCATACCCCCTGATCTAAAGGCAACTGCCTTTTCAACTCCAAAGGGTGGACGATTGATTGGTAGTGGAGGGCTGCAGAGAAGTCCTCGTGGAAGAAGTGCCAAGCTCTCACGAGTGCTATCCAAAAAGGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAATATTGTTCGACATGGGGCTCTTTCAACTTTGGATGAACAGATAAAGGATTCAACTCATGAGGAAGATGAATCAGCCACACAGATAAGGAGTGAATTTGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCAGAATGTGGCTAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCAAGAAGATGAGGCTTCAAAAACCATGAGTCTCTTTGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAATCATCCTTAAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCCTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCGGTTGTTATTCTGGTTATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTCGTAACATCTCAACTTGTCCTAGTTGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTCTGACGACCATTTTCCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGACAGTGTAGAATTCTGTCTTCACATATCTACTCCGCCTGAGAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAGGAGCACTGGTGTTCTACGCCAATGATTGTCCTCAAAGATGTAGAAGAGTTGAATAGAATGAGAATAGCCATATGGCTTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGACAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGATCTTCAATACCGTCTGCTACCGCTCGATATCAATGTTCGTTCCTTGCCTCCTGTGAACTCTACCAGGCTTCCAGCTACTTGGACAACCACTGCAAGTTGA 2805 44.31 MDFSLKSFKSHGSYKYVRKLSGDQEQLPILSDQEPDNLHRNHSIMAPSDASDRREVIVKIDQSDASSNASSRAVESVNSNGRIWRESSYDFWNDSDGRRNNGEGSNGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPLDKTLPPVAESPMRRSSRELKVSFESISEISENDSIRRRHRDSPADEEHRGGQQSQKGDRRAYGNGHDDSGDEVVRCTSNSSFQRSVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGRVPKSGQMRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWRQKNLWKLKLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVTTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTPKGGRLIGSGGLQRSPRGRSAKLSRVLSKKGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIRSEFEAKVAAKKIFQNVARHGSKYIYLEDLMRFMQEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDSVEFCLHISTPPEKIAVMRQRIVSYIEGKKEHWCSTPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTTTAS 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9643270 9647668 + Tan0022520.1 Tan05g1092 752400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1092 934 MobiDBLite consensus disorder prediction 90 130 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 187 230 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 258 275 - -
Tan05g1092 934 Gene3D - 758 807 IPR023408 -
Tan05g1092 934 MobiDBLite consensus disorder prediction 21 54 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 187 231 - -
Tan05g1092 934 PIRSF Memb_At2g17000 39 934 IPR016688 -
Tan05g1092 934 Coils Coil 488 511 - -
Tan05g1092 934 FunFam Predicted mechanosensitive ion channel 758 807 - -
Tan05g1092 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 36 931 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Tan05g1092 934 MobiDBLite consensus disorder prediction 256 280 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 90 127 - -
Tan05g1092 934 Pfam Mechanosensitive ion channel, beta-domain 751 808 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1092 934 SUPERFAMILY Sm-like ribonucleoproteins 748 807 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1092 K22048 - - csv:101210264 1487.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1092 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 5.90E-153 dispersed
Tan05g1092 Tan-Chr5:9643270 Tan05g1093 Tan-Chr5:9643270 0.00E+00 tandem
Tan01g3463 Tan-Chr1:99949559 Tan05g1092 Tan-Chr5:9643270 9.40E-130 transposed
Tan06g2243 Tan-Chr6:73248345 Tan05g1092 Tan-Chr5:9643270 1.30E-144 transposed
Tan02g0642 Tan-Chr2:5908929 Tan05g1092 Tan-Chr5:9643270 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g2174 . 1 503 Mechanosensitive Ion Channel Family AT4G00290 50.6 4.7e-133 472.2
Tan01g1484 . 58 725 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.8e-196 683.3
Tan02g2481 . 10 705 Mechanosensitive Ion Channel Family AT5G10490 55.8 4.9e-194 675.2
Tan02g2481 . 10 685 Mechanosensitive Ion Channel Family AT1G58200 57.8 7.5e-198 688.0
Tan01g1484 . 49 695 Mechanosensitive Ion Channel Family AT1G58200 53.0 5.7e-174 608.6
Tan05g1092 . 45 934 Mechanosensitive Ion Channel Family AT1G53470 56.7 3.3e-270 928.7
Tan02g0642 . 83 943 Mechanosensitive Ion Channel Family AT1G53470 50.8 4.2e-233 805.4
Tan05g1093 . 45 676 Mechanosensitive Ion Channel Family AT1G53470 51.9 8.0e-160 562.0
Tan05g1092 . 45 929 Mechanosensitive Ion Channel Family AT3G14810 53.8 2.8e-250 862.4
Tan05g1092 . 49 934 Mechanosensitive Ion Channel Family AT1G78610 59.9 2.4e-286 982.2
Tan02g0642 . 61 941 Mechanosensitive Ion Channel Family AT1G78610 56.8 6.8e-265 911.0
Tan05g1093 . 49 676 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.2e-173 607.8
Tan05g1092 . 224 930 Mechanosensitive Ion Channel Family AT2G17000 61.5 2.2e-239 826.2
Tan02g0642 . 271 944 Mechanosensitive Ion Channel Family AT2G17000 59.2 1.7e-220 763.5
Tan05g1093 . 224 676 Mechanosensitive Ion Channel Family AT2G17000 58.3 3.5e-136 483.4
Tan09g1102 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 3.3e-199 692.6
Tan01g3463 . 80 728 Mechanosensitive Ion Channel Family AT5G12080 55.8 3.5e-193 672.5
Tan09g1099 . 67 720 Mechanosensitive Ion Channel Family AT5G12080 51.1 3.1e-165 579.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67