Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1092 ATGGATTTCTCCCTCAAGTCTTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGTGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAACCGGATAATCTTCACCGGAATCACTCCATTATGGCGCCGTCCGATGCATCTGACCGGAGAGAGGTCATCGTCAAGATCGATCAGTCTGATGCTTCGAGTAATGCATCATCGAGAGCGGTGGAGTCGGTGAACTCCAATGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATGGTAGACGGAATAATGGTGAAGGTAGTAATGGCGATGGTAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAGGATCCGCCTTCGAAGCTTATTGGACAGTTTCTGCACAAGCAGAAGGCGTCGGGAGAGATGTCGTTGGATATGGATATGGAAATGTTGGAACTACCACTTGATAAGACTCTGCCTCCGGTGGCGGAATCTCCGATGCGACGGAGCTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAACGATTCGATTCGAAGACGGCATAGAGACTCGCCGGCCGATGAAGAACATAGAGGAGGACAACAATCGCAGAAGGGTGATCGTCGAGCTTATGGCAATGGTCATGATGATAGTGGTGATGAGGTTGTGAGATGCACATCTAATTCTTCGTTTCAGAGAAGCGTATCGTTCCAAAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCCAGACTGTTGGACCCGCCTGAACAGCCGGACCGGAGGTCAGGGCGAGTACCAAAATCAGGGCAAATGCGCTCGGGATTGTTGTCGAAAGCTTTGGATGAAGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCAGATGAGTATAAGAAGGCTAATCTTGGTGTTCTTACTCTGTTACAATGGGCGAGTTTGATTTTGATCATCGCAGCATTAGTTTGCACTCTGACAATCCCTTACTGGAGGCAAAAGAATCTATGGAAGCTTAAGTTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGGTTTCTGGATGGGGGATCAGGATAATCGTCTTCTTCATCGAGAGAAACTTTCTACTGCGTAAAAGGGTTCTATACTTCGTTTATGGGGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTAGGTCTTGTTTTAATTGCTTGGAACTTTCTGTTCGATGACAAAGTTCAGAGAGAAGTAAAAAGCAATGCCCTCGAGTATGTGACTAAAGTTCTTGTATGCCTTCTTGTAACCACTTTGGTTTGGCTGGTGAAAACGCTAATGGTGAAGGTTCTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCACTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCGCCATTGATAGAGATTCAAAAGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTATAAAGTTACAGAATGCAGGGGCCACCATACCCCCTGATCTAAAGGCAACTGCCTTTTCAACTCCAAAGGGTGGACGATTGATTGGTAGTGGAGGGCTGCAGAGAAGTCCTCGTGGAAGAAGTGCCAAGCTCTCACGAGTGCTATCCAAAAAGGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAATATTGTTCGACATGGGGCTCTTTCAACTTTGGATGAACAGATAAAGGATTCAACTCATGAGGAAGATGAATCAGCCACACAGATAAGGAGTGAATTTGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCAGAATGTGGCTAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCAAGAAGATGAGGCTTCAAAAACCATGAGTCTCTTTGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAATCATCCTTAAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCCTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCGGTTGTTATTCTGGTTATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTCGTAACATCTCAACTTGTCCTAGTTGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTCTGACGACCATTTTCCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGACAGTGTAGAATTCTGTCTTCACATATCTACTCCGCCTGAGAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAGGAGCACTGGTGTTCTACGCCAATGATTGTCCTCAAAGATGTAGAAGAGTTGAATAGAATGAGAATAGCCATATGGCTTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGACAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGATCTTCAATACCGTCTGCTACCGCTCGATATCAATGTTCGTTCCTTGCCTCCTGTGAACTCTACCAGGCTTCCAGCTACTTGGACAACCACTGCAAGTTGA 2805 44.31 MDFSLKSFKSHGSYKYVRKLSGDQEQLPILSDQEPDNLHRNHSIMAPSDASDRREVIVKIDQSDASSNASSRAVESVNSNGRIWRESSYDFWNDSDGRRNNGEGSNGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPLDKTLPPVAESPMRRSSRELKVSFESISEISENDSIRRRHRDSPADEEHRGGQQSQKGDRRAYGNGHDDSGDEVVRCTSNSSFQRSVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGRVPKSGQMRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWRQKNLWKLKLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVTTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTPKGGRLIGSGGLQRSPRGRSAKLSRVLSKKGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIRSEFEAKVAAKKIFQNVARHGSKYIYLEDLMRFMQEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDSVEFCLHISTPPEKIAVMRQRIVSYIEGKKEHWCSTPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTTTAS 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9643270 9647668 + Tan0022520.1 Tan05g1092 752400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1092 934 MobiDBLite consensus disorder prediction 90 130 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 187 230 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 258 275 - -
Tan05g1092 934 Gene3D - 758 807 IPR023408 -
Tan05g1092 934 MobiDBLite consensus disorder prediction 21 54 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 187 231 - -
Tan05g1092 934 PIRSF Memb_At2g17000 39 934 IPR016688 -
Tan05g1092 934 Coils Coil 488 511 - -
Tan05g1092 934 FunFam Predicted mechanosensitive ion channel 758 807 - -
Tan05g1092 934 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 36 931 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Tan05g1092 934 MobiDBLite consensus disorder prediction 256 280 - -
Tan05g1092 934 MobiDBLite consensus disorder prediction 90 127 - -
Tan05g1092 934 Pfam Mechanosensitive ion channel, beta-domain 751 808 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g1092 934 SUPERFAMILY Sm-like ribonucleoproteins 748 807 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1092 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 5.90E-153 dispersed
Tan05g1092 Tan-Chr5:9643270 Tan05g1093 Tan-Chr5:9643270 0.00E+00 tandem
Tan01g3463 Tan-Chr1:99949559 Tan05g1092 Tan-Chr5:9643270 9.40E-130 transposed
Tan06g2243 Tan-Chr6:73248345 Tan05g1092 Tan-Chr5:9643270 1.30E-144 transposed
Tan02g0642 Tan-Chr2:5908929 Tan05g1092 Tan-Chr5:9643270 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1092 K22048 - csv:101210264 1487.24