Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1111 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGACATGTGCACAAAGGTTCAGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAGGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAATCAGGCAATTTGAGCTTGCACGAGTCCGGGCCATATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCTGAGACATCTCGCTATGTGAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACCTCAGAGCAACAATCCATGTCAGTGGATGTCATTCGAAAGGCCTTTCAAGCTACCGAAGAAGGGGTCATTGCTCAAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGCATAATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCCGTTCAGTTGTCGGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGACCCACAGATTGTAGTTTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGGTTTCTCGATCTATCGGTGATGTCTACTTAAAGAAAGCTGAGTTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGTGAACCTATCAAAAAACCCATACTGAGCGCCGAACCATCGATTTCAGTTCTCCAATTACAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAACCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCAGGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGCGGCGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCAAACCTTGTGAGCCGAGCTAGCTCTACAAAATGTGCAAGCCTATCTGTGCGAGGGGGCGGAGTTAACTTGCGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACTGGCATGGCCTGA 1194 47.57 MFSELMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHESGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGIICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9942096 9946438 - Tan0021649.1 Tan05g1111 752419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1111 397 Pfam Protein phosphatase 2C 75 323 IPR001932 -
Tan05g1111 397 SMART PP2C_4 39 353 IPR001932 -
Tan05g1111 397 CDD PP2Cc 48 355 IPR001932 -
Tan05g1111 397 FunFam Phosphatase 2C family protein 36 365 - -
Tan05g1111 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Tan05g1111 397 PANTHER PROTEIN PHOSPHATASE 39 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan05g1111 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Tan05g1111 397 Gene3D - 36 367 IPR036457 -
Tan05g1111 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2124 Tan-Chr3:76028766 Tan05g1111 Tan-Chr5:9942096 9.40E-185 dispersed
Tan03g2125 Tan-Chr3:76028766 Tan05g1111 Tan-Chr5:9942096 9.40E-185 dispersed
Tan05g1111 Tan-Chr5:9942096 Tan08g1951 Tan-Chr8:71647066 8.10E-144 dispersed
Tan05g1111 Tan-Chr5:9942096 Tan05g1112 Tan-Chr5:9942096 1.80E-228 tandem
Tan02g1010 Tan-Chr2:14277094 Tan05g1111 Tan-Chr5:9942096 1.70E-111 transposed
Tan02g0659 Tan-Chr2:6074965 Tan05g1111 Tan-Chr5:9942096 1.00E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1111 - - - 0.0