Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1133 ATGGAAGACGGCGAGCTTGAATCCTCGAATCCGGAAGTGTTCTCGAGTTCGAATGTTGTTGAGCTTCCGAGCAGTTGCTCGATGGATAGTTTCTTGGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTACTCACATACGCACACCTGTTTTCATGTCCATACTAAAATTGTCTCCTCCCCCACGGAAGAAAAGGTTTCCACTGATGACACAGCAGACTCTGTTGATAAAAAGACTAAGAAACGTCCGCTAGGTAATCGCGAAGCAGTTCGTAAATACCGTGAGAAGAAGAAGGCAAGAGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGACCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGGATTGAAGGGGAGATTGGAACATTTCCATATCAGAAACCAGTCAGTTCAACTCTGCCCAATCAAAATGTGCCTGGTAGTTACATGATAAATCCATGTAATGTGCAGTGCAATGATCAGGCATATTGCCTTCATGCAGGGGCCGATGGAAAAAGTGGAGAGAGCATTTTGTTGAACGGGCAAAGTTTTAGTGGGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACGCAGAAGGGAAGGAACTTCCTGACTGTGGATTAGGGGACACAATTTCTAACATTAATTGCTCCGAATTAAATCAGAAGAAAGGAGGTGGGGTCTGTAGGAAGACCAAAAATGGGAAGAGCTGA 822 44.77 MEDGELESSNPEVFSSSNVVELPSSCSMDSFLDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTADSVDKKTKKRPLGNREAVRKYREKKKARAASLEDEVVRLRTLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPVSSTLPNQNVPGSYMINPCNVQCNDQAYCLHAGADGKSGESILLNGQSFSGCDFENLQCLANQNAEGKELPDCGLGDTISNINCSELNQKKGGGVCRKTKNGKS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10154301 10157679 - Tan0011604.4 Tan05g1133 752441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1133 273 MobiDBLite consensus disorder prediction 77 98 - -
Tan05g1133 273 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1133 273 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 192 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Tan05g1133 273 FunFam Basic leucine zipper 24 75 153 - -
Tan05g1133 273 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1133 273 Coils Coil 98 132 - -
Tan05g1133 273 SMART brlzneu 85 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g1133 273 MobiDBLite consensus disorder prediction 72 98 - -
Tan05g1133 273 Gene3D - 75 153 - -
Tan05g1133 273 CDD bZIP 90 144 - -
Tan05g1133 273 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1130 Tan-Chr5:10154301 Tan05g1133 Tan-Chr5:10154301 7.50E-141 dispersed
Tan05g1131 Tan-Chr5:10154301 Tan05g1133 Tan-Chr5:10154301 2.30E-134 dispersed
Tan05g1132 Tan-Chr5:10154301 Tan05g1133 Tan-Chr5:10154301 2.30E-134 tandem
Tan05g1133 Tan-Chr5:10154301 Tan05g1134 Tan-Chr5:10155673 6.80E-134 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27485 PF07716 bZIP_2 2.30E-15 CL0018 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1133 K25785 - csv:101219501 502.671