Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1140 ATGGCCAACGAAGAAGACGATCTCGATCTTCTCCTTTCTCTCCAAGATAAAGTTGTCGAAACTCCTCCTGGAACTCCGCTTCACACCTCAGATTTTCTATCTGACGATGAATCACCCAGACGAGCAGGTCCTGCGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCCTCGACTATGACCACGTACCATCTGAAAGAAGTGGAAAAACTAACCGATCAAAGGCCTCGAATGACGCTACGGTCGAGAAGTTCTCTGGTCTGCGAGTGAGGAATCAACTGGTAGAACCTGCAGAGCTTCGTGATCGTTTTTCTGATATTCGCTTTGTTCGCTTGTCTATCATAAAGAATCTGTTGGTTGGAGACACCCTTTCAGGCTGTTGGGTAACTGTCGGAGTGTTGACTGAGAAAGGGAGTCCAAAGACAAGCTCTACAGGGAAAGCTTACTGCATCTGGAAACTTAGTTGTTTGGATGAAAACACTGTTTCGGTTTTCTTATTTGGCGATGCTTATAAAAGAAATTGCAAGGAGCTCGCTGGAACAGTTTTTGCACTTTTTAACTCTACCGTACGCAAGGATGCAGTGGGCATGGGGTTTTCTTTAAGTGTGTATCAACCAAACCAGTTGTTAAAGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGAAGGATGGGATGGCTTGTACAACAGTAATAAATAGGCGACGTGGCATATACTGTAAATATCATAAATCAAAGTCATCAGAAAAATATTCCACAACCACACGAACTGAGCTCAAAGGAGGGAATCTGAGGACTGCATTCAGAGATCATCATCTCAAGGCAGAAGGAGTTTACATGGTAGATCCGCTAGCTGGTAAAGTGAATTTTAAGAAGCCAGTTCCGCCGGTAAAACTGTTGTCTGTGGAAGGCCTAAAAAAGGCATTGAGCAATGCAGATAAAGTGACCACCAATGCACACTCGCAAGGGAAAAGATTCCTTGCCGAGATCACAGGGAAATTGAACAATAAAAATGTAAATAAAGAATCAGCCAAACAAAATCAGCACAGGATCAGTTCAGAGAAGACGTCAATTTCGAAGTCATCTACCATGAAAAGGGATTCGGGAATTGAAAACCAACAACCAGATCCCAAAAGAAAGAAAACCGAACATGCTTCGGCAGACAAAACCACAGAAAATATTGGAAAGATGATCGAGTTAGATTATGTTAGTTCAGATGATGATATCGACATTATACTCACCCGATAA 1257 42.72 MANEEDDLDLLLSLQDKVVETPPGTPLHTSDFLSDDESPRRAGPADMSIFRNAVKDCLDYDHVPSERSGKTNRSKASNDATVEKFSGLRVRNQLVEPAELRDRFSDIRFVRLSIIKNLLVGDTLSGCWVTVGVLTEKGSPKTSSTGKAYCIWKLSCLDENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRKDAVGMGFSLSVYQPNQLLKMGTSDDYGVCKGKKKDGMACTTVINRRRGIYCKYHKSKSSEKYSTTTRTELKGGNLRTAFRDHHLKAEGVYMVDPLAGKVNFKKPVPPVKLLSVEGLKKALSNADKVTTNAHSQGKRFLAEITGKLNNKNVNKESAKQNQHRISSEKTSISKSSTMKRDSGIENQQPDPKRKKTEHASADKTTENIGKMIELDYVSSDDDIDIILTR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10177137 10182596 - Tan0013859.1 Tan05g1140 752448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1140 418 MobiDBLite consensus disorder prediction 353 373 - -
Tan05g1140 418 Pfam Primase zinc finger 213 255 IPR015408 GO:0005634(InterPro)|GO:0006260(InterPro)
Tan05g1140 418 Coils Coil 330 350 - -
Tan05g1140 418 Gene3D - 73 247 IPR012340 -
Tan05g1140 418 MobiDBLite consensus disorder prediction 16 44 - -
Tan05g1140 418 PANTHER PROTEIN MCM10 HOMOLOG 2 391 IPR040184 GO:0003688(PANTHER)|GO:0003690(InterPro)|GO:0003697(PANTHER)|GO:0003697(InterPro)|GO:0006270(PANTHER)|GO:0006270(InterPro)|GO:0043596(PANTHER)
Tan05g1140 418 MobiDBLite consensus disorder prediction 340 397 - -
Tan05g1140 418 FunFam DNA replication licensing factor mcm10 74 248 - -
Tan05g1140 418 MobiDBLite consensus disorder prediction 374 393 - -
Tan05g1140 418 Pfam MCM10 OB-fold 84 210 IPR055065 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1140 Tan-Chr5:10177137 Tan05g1141 Tan-Chr5:10177137 9.00E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1140 K10736 - csv:101219022 679.478