Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1142 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTACTACCCGTTCTACCAAGCGCGCTCGTCTATCTGGTACTTCCTCATCGAATCTTGCTGCATCCGCTCTTTCGATCTCAACCCGTTCTCGCTCTATTCGAACCCAAGAACCATCTGCCACCAGTACTCCAATGGACTCGGCCAATGAATCATCGGGGTCACGCCGGCGTGGGAAGAACTCCGATAAAGAGAACTCGGATAAGGGGAAGGAGAAAGAACATGAGGTGAGGATCGGGGATAGAGAAAGGAATGCGGAGCAGAGCTTTGGGCTAAATATTGAAGGCAGTGGTGGTGGAGAGGATGATGATAACGACAGTGAAGGAGGAATGGGAGTCTTGCAGCAGAATTTATCCACGGCAAGTAGCGCCCTTCAAGGACTTCTGAGGAAACTCGGTGCTGGACTAGATGATTTGCTCCCGTCATCTGCAATTGCATCGGCTTCATCTTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAGGCAGGTTGAGGCATTGACACAACTTTGTGAGATGCTCTCAATTGGCACCGAGGAATCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTTGTTGGGTTACTTAATCATGAAAGCAATCCGGATATAATGCTTCTAGCGGCCAGGGCACTAACCCATCTGTGTGATGTCCTGCCTTCATCTTGTGCTGCTGTCGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACTTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCCTGCCTGCGTGCTGGTGCTCTTATGGCCGTGCTTTCATATTTAGATTTCTTCTCCACGGGAGTTCAGCGAGTAGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTTGTGATGGAAGCTGTTCCCCTGCTAACAAACCTTCTTCAGTATCATGATGCAAAGGTGTTGGAGCATGCTTCTGTTTGTTTGACTCGTATTGCCGAGGCTTTTGCATCATCACCTGATAAATTAGATGAACTATGTAATCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCACTAGTAGTACCGGAGGTGGACAGTCAACTCTCAGCACAGCTACTTATACTGGATTAATCCGACTTCTTTCCACATGTGCAAGCGGGTCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTGTCTGGTTCTGGTGTGTCTACTAATGCATCTGTTTCACCTGCTTTGAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAACCATTTCCTTTCCGCCCAACTTTAATATGTTTGTGAAAGGACCTGTCATCAAGAAGCCTTCTACTAGCGGTTCTGTGAAAGAAGAAGATCCAACTGATACTGCCCCAGAGGTTTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCCGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGGTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCGGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATATTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTCCATGAAACATTTTCCAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGATCAGCTTATCTTAGCTAATAACCTTAATACTGCCTCCCAAGCCGCTTCTGTTGAGAAGGATAATAACTCTACACCCGGAACTTCATCACGCACTCGACGTTATAGAAGGCGCAGTGGAAATATGAATCTGGATGGAAGTTCACTGGATGAAAACAAGAATCCTGTTTCTGGTAGTGGTGTTCCACAGGGTTCAGTGGAGGCTCCATCAATTAATTCTAATCTTCGAACTGCTGTGAGTGCCTGTGCCAATGCTTTTAAAACTAAGTACTTCCCTTTAGATCTAGGAGACGTCGAAGTCGGAGTTACAGACGATCTCTTACGTTTGAAGAATCTTTGTGTCAAGTTGAATGCTGGCATTGATGATCAGAAGACTAAATCAAAAGGGAAGTCAAAAGCTTCAGGCTCCCGCCTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGTGTAATATCTGAAATGCTAATTGAATTGGGCAAAGATGACGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTCGGAAGTGGAGTTGCCGAAGCTTCGGCAACAAGTACTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCGTTAATGGGGGGGCAGTAGCGCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCGTTGGAGCGTTTTCCCGTTGTCCTGAGCCATTCTTCTAGATCATCCAATGGTAGTGCACGCCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAAGGAGAGAAATCACTTCGTGATTATTCATCAAATATTGTCCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGGGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGCGAACTCGGATTCAGGAACAACTCCCACAGGAACTGTTGCTTCAGCAGGGTTAACTTCAACTCCTAGTTCAACCACTCGCCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACTTCAAAGGGGAAGGGCAAAGCTATTCTAAAGCCTGCTTGGGAGGAGAAGAGAGGCCTACAAACTAGAAGTTCTACTCGGAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGCAAATGGAGAGACCACTTCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGCTGACGCAGTTGAAGATGGTGATGCTGGTCCAGCTACAAGCGATAGCCAGATTCATTCAACTTTTGGCTCTAGCAGTAGAGCTGCTCCAGTGAGGGGTTCTAATTCTCCTGATCATAGGAGTGCCAATGCTTATAGTTCAAGGGGAGGTATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGACCAGCTAATGGCAGAGCTTTCCGGGGAGGTCGGGATCCACAGGGACGTCCTCTCTTTGGTGGCTCCAACGATAACCCGAAATTAGTCTTTTCTTCCGGTGAAAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTTTTGAACGAGGATGATGATGAGAGGTTTGCTGGTTCTGGCAGTGACTTCTTATCTAATGATGGGAGCAGTTTATGGGGTGATATATATACTATCACATATCAGAGGGTAGATAATCAATCTGAAAGGGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTAATGACTTCCAGTTCAAATTCCGATACTCAGTTCCATCAAATGTCACTTCTAGATAGTATTTTACAGGGAAAAATTCCATGTGATTTGGACAAATCTAATCCTACATATGATATACTATCTTTACTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAGATAGTGTCAGATCATTTTGCAGAGGGAAAGATCACTACACTTGATGAGTTAGGTGGAATTGGTGGAAAAGTTCCTCATGAGGAATTTATCAACAGTAAGCTTACTCCCAAATTGGCTCGACAAATTCAGGATGCTCTTGCACTGTGCAGTGGGAGTCTTCCCTCATGGTGTTACCAATTGACTAAGGCATGCCCGTTCTTGTTTCCTTTTGAGACCCGGCGACAGTATTTCTATTCAACTGCATTTGGGCTCTCACGTGCATTATATCGGCTACATCAGCAACAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAAGTTCGTGTCTCCCGTAATCGTATACTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAGGCCGTCCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACGCTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGGATGTGGAGGTCTAATTCTTTACAAGATTCGATTGAAAGTGGTGAAGATGGGCAGATTAGGAAGGCTAAAGGTGGCAATATTGATATCATCCAATCTCCTCTTGGGTTGTTCCCACGTCCCTGGCCACCAAATGCAGATTCTTCCGAGGGCAGCCAATTTTCAAAGGCGATCGAATATTTCCGGCTTGTTGGTCGTGTGATGGCCAAAGCTCTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGATGCCGAGCTTGGGAAGAATTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAACAGTTTTTAGAATTGATAAATGGTGATAATGAAAATACAATTTTCAACTTGTCTTTCCGCGGGGTTGCAGTAGAAGATCTCTCCTTGGATTTTACACTTCCTGGTTATCCAGACTACGTTTTGAAACCAGGAGATGAAACTGTTAATATCCACAACTTGGAGGAGTACATATCCCTCGTACTAGATGCAACTGTCAAGACTGGAATAATGCGTCAATTGGAAGCATTTACTGCAGGATTCAATCAGGTGTTTGACATCTCAGCATTGCGCATATTTATTCCCCATGAGTTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCCGACACACTTGTTGATCATATTAAATTTGATCATGGATACACTGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCAGAGCAACAGCGAGCATTCTGTCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAAATTGACTATTGTGAGAAAGCACTCATCAACTGCAACTAATGCAGCAGCCAGCGGGACAGGGGCTTCTGAATCAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCAACCAAGGAAATAATGTACAAGAAACTAATCTATGCGATCAATGAGGGGCAGGGATCCTTCGATTTGTCATGA 5649 44.45 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSGTSSSNLAASALSISTRSRSIRTQEPSATSTPMDSANESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSTATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNMFVKGPVIKKPSTSGSVKEEDPTDTAPEVSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNLNTASQAASVEKDNNSTPGTSSRTRRYRRRSGNMNLDGSSLDENKNPVSGSGVPQGSVEAPSINSNLRTAVSACANAFKTKYFPLDLGDVEVGVTDDLLRLKNLCVKLNAGIDDQKTKSKGKSKASGSRLDDIITNKEEYLTGVISEMLIELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEVELPKLRQQVLKRFKSFISVALPTSVNGGAVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSNGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPTGTVASAGLTSTPSSTTRRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPANGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLADAVEDGDAGPATSDSQIHSTFGSSSRAAPVRGSNSPDHRSANAYSSRGGMSFAAAAMAGLGPANGRAFRGGRDPQGRPLFGGSNDNPKLVFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGSGSDFLSNDGSSLWGDIYTITYQRVDNQSERALAGESSSSKSKSTKCVMTSSSNSDTQFHQMSLLDSILQGKIPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDHFAEGKITTLDELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQDSIESGEDGQIRKAKGGNIDIIQSPLGLFPRPWPPNADSSEGSQFSKAIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKNLQELQALVCRKQFLELINGDNENTIFNLSFRGVAVEDLSLDFTLPGYPDYVLKPGDETVNIHNLEEYISLVLDATVKTGIMRQLEAFTAGFNQVFDISALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNAAASGTGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS 1882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10187885 10205395 - Tan0010641.1 Tan05g1142 752450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1142 1882 MobiDBLite consensus disorder prediction 680 707 - -
Tan05g1142 1882 ProSiteProfiles HECT domain profile. 1490 1882 IPR000569 GO:0004842(InterPro)
Tan05g1142 1882 FunFam HECT ubiquitin protein ligase family protein KAK 171 485 - -
Tan05g1142 1882 Pfam HECT-domain (ubiquitin-transferase) 1567 1882 IPR000569 GO:0004842(InterPro)
Tan05g1142 1882 Gene3D - 179 660 IPR011989 -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 74 106 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1132 1164 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 957 1105 - -
Tan05g1142 1882 SUPERFAMILY Hect, E3 ligase catalytic domain 1458 1875 IPR035983 GO:0004842(InterPro)
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1124 1164 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1 134 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1011 1054 - -
Tan05g1142 1882 Gene3D Hect, E3 ligase catalytic domains 1406 1644 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 10 73 - -
Tan05g1142 1882 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 135 1882 IPR045322 GO:0000209(PANTHER)|GO:0006511(InterPro)|GO:0043161(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1066 1101 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 957 1010 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 654 707 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1185 1207 - -
Tan05g1142 1882 MobiDBLite consensus disorder prediction 1274 1297 - -
Tan05g1142 1882 Gene3D Hect, E3 ligase catalytic domain 1753 1880 - -
Tan05g1142 1882 SUPERFAMILY ARM repeat 76 655 IPR016024 -
Tan05g1142 1882 SMART arm_5 209 250 IPR000225 GO:0005515(InterPro)
Tan05g1142 1882 SMART arm_5 335 373 IPR000225 GO:0005515(InterPro)
Tan05g1142 1882 SMART arm_5 292 332 IPR000225 GO:0005515(InterPro)
Tan05g1142 1882 SMART hect_3 1477 1882 IPR000569 GO:0004842(InterPro)
Tan05g1142 1882 FunFam E3 ubiquitin-protein ligase UPL3 1407 1643 - -
Tan05g1142 1882 CDD HECTc 1466 1877 IPR000569 GO:0004842(InterPro)
Tan05g1142 1882 MobiDBLite consensus disorder prediction 654 669 - -
Tan05g1142 1882 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1751 1881 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1142 K10590 - - csv:101218793 3250.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0691 Tan-Chr2:6451244 Tan05g1142 Tan-Chr5:10187885 0.00E+00 dispersed
Tan02g0692 Tan-Chr2:6451244 Tan05g1142 Tan-Chr5:10187885 0.00E+00 dispersed
Tan02g2453 Tan-Chr2:93152054 Tan05g1142 Tan-Chr5:10187885 4.80E-33 transposed
Tan06g2787 Tan-Chr6:80081639 Tan05g1142 Tan-Chr5:10187885 2.10E-26 transposed
Tan08g1922 Tan-Chr8:71486910 Tan05g1142 Tan-Chr5:10187885 8.10E-257 transposed
Tan02g0690 Tan-Chr2:6451244 Tan05g1142 Tan-Chr5:10187885 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48