Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1144 ATGGACTGGCTTAACCAGTTTATTGCCTATCTGTGGCCTTACATTGATAAGGCAATTGCCAAGACAGTAAGAAGTGTTGTTAAACCAATAATTGCTGAGGAGATTCCTAAATATAAGATCCATTCCATCGAATTCCAAGAGCTCACGCTCGGGACACTCTCGCCAACTCTTCAAGGTATGAAAGTCTATGAAATGCATGAAAAGGAGTTGATGTTGGAACCTGCAATTAAATGGGCTGGAAATCCCAACATCATGGTTGCAATTAAAGCATTTGGATTAAAAGCCACTGTCCAGGTGGTGGATCTGCAAGTTTTCGCCGTGCCACGGATTATCTTGAAGCCGCTGGTTCCGAGTTTTCCTTGTTTTGCAAACATTTCTGTCTCTCTTATGGAAAAGCCACACATTGATTTTGGACTAAAGCTCATGGGAATCGACCTTATGTCAATACCCGGTCTTTATAGCTTTGTCCAGGAACGCGTAAAAGATCAGATTGCGAGCATGTATCTATGGCCGAAGACTCTAAAAATACAAATTCTGGACTCGGCTAAAGCCTTTAAGAAGCCTGTGGGAATTCTCCACGTGAAAGTTGTGAGGGCAATGAACCTTAGAAAAAAGGATCTTTTAGGTGCATCAGATCCATATCTGAAACTAAAGCTCACTGATGACAAGTTACCTTCAAAGAAGACGTCCGTGAAGCACAACAACTTGAACCCCGAATGGAACGAAGAGTTCAAGTTAGCCGTTAGAGATCCCGAATCCCAAGCCTTAGAACTCCATGTTTACGATTGGGAGCAGATTGGGAGACATGACAAGATGGGCATAAATGTTATACCTCTGAAAGATCTTCCTCCTGATGAGGCGAAAGTTTTGACTCTCGACCTTAAAAAGAACACTGATTCAAATAATGATGAGAATGTGAAGGACCGCGGTCAGGTTGTAGTTGAACTTAAATATAAACCGTTTAAAGAGGAGGAGATGTCAAAGGGTTTTGAAGAAATGCATGCAGTACCGAAAGCTCCCGAAGGAACACCTGCTGGCGGCGGTTTGCTGGTGGTCGTAGTACATGAAGCTGAAGATGTTGAAGGAAAACATCATACCAATCCATTTGTAAGGATTTACTTCAGAGGGGATAAGAGAAAAACTAAGCGGGTGAAGAAGAACAGAGATCCAAGATGGGAGGAGGAGTTCCATTTTATGGTAGACGAGCCTCCCACGAACGACAAATTACACGTAGAAGTTGTCAGTACATCTTCAAAAATAGGTTTGCTGCATCCAAAGGAATGTTTGGGATATGTGGATATCAGCCTGTCGGATGTCGTGGCCAATAAAAGGATTAACGAGAAGTACCATCTCATAGACTCGAAGAATGGACGAATTCAGGTTGAACTGCAATGGAGAACTTCTTCATAG 1410 42.62 MDWLNQFIAYLWPYIDKAIAKTVRSVVKPIIAEEIPKYKIHSIEFQELTLGTLSPTLQGMKVYEMHEKELMLEPAIKWAGNPNIMVAIKAFGLKATVQVVDLQVFAVPRIILKPLVPSFPCFANISVSLMEKPHIDFGLKLMGIDLMSIPGLYSFVQERVKDQIASMYLWPKTLKIQILDSAKAFKKPVGILHVKVVRAMNLRKKDLLGASDPYLKLKLTDDKLPSKKTSVKHNNLNPEWNEEFKLAVRDPESQALELHVYDWEQIGRHDKMGINVIPLKDLPPDEAKVLTLDLKKNTDSNNDENVKDRGQVVVELKYKPFKEEEMSKGFEEMHAVPKAPEGTPAGGGLLVVVVHEAEDVEGKHHTNPFVRIYFRGDKRKTKRVKKNRDPRWEEEFHFMVDEPPTNDKLHVEVVSTSSKIGLLHPKECLGYVDISLSDVVANKRINEKYHLIDSKNGRIQVELQWRTSS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10253697 10257225 + Tan0005487.2 Tan05g1144 752452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1144 469 FunFam Extended synaptotagmin-2 349 467 - -
Tan05g1144 469 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 348 466 IPR035892 -
Tan05g1144 469 ProSiteProfiles C2 domain profile. 170 292 IPR000008 -
Tan05g1144 469 CDD SMP_SYT 1 178 - -
Tan05g1144 469 CDD C2 192 285 - -
Tan05g1144 469 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 179 IPR031468 GO:0008289(InterPro)
Tan05g1144 469 ProSiteProfiles C2 domain profile. 329 449 IPR000008 -
Tan05g1144 469 FunFam Synaptotagmin-2 isoform A 185 340 - -
Tan05g1144 469 SMART C2_3c 349 448 IPR000008 -
Tan05g1144 469 SMART C2_3c 191 291 IPR000008 -
Tan05g1144 469 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 187 323 IPR035892 -
Tan05g1144 469 Gene3D C2 domain 349 468 IPR035892 -
Tan05g1144 469 PRINTS C2 domain signature 234 247 IPR000008 -
Tan05g1144 469 PRINTS C2 domain signature 256 264 IPR000008 -
Tan05g1144 469 PRINTS C2 domain signature 207 219 IPR000008 -
Tan05g1144 469 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 2 174 IPR039010 -
Tan05g1144 469 Gene3D C2 domain 184 339 IPR035892 -
Tan05g1144 469 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 467 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Tan05g1144 469 Pfam C2 domain 349 451 IPR000008 -
Tan05g1144 469 Pfam C2 domain 190 288 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1144 K28063 - - csv:101218559 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0693 Tan-Chr2:6467022 Tan05g1144 Tan-Chr5:10253697 1.70E-208 dispersed
Tan05g1144 Tan-Chr5:10253697 Tan11g0878 Tan-Chr11:7182110 3.50E-154 dispersed
Tan05g1143 Tan-Chr5:10252780 Tan05g1144 Tan-Chr5:10253697 2.30E-274 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96