Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1181 ATGGCGGCAACTATGTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCCGAGCTTCTTAAGGACCAGCAGGACCTGTCCCGCTCGCAATCGGAACCCAGTGCTGACTTTCCGTCCCTCGCCGCCGCGGCCGCCACCAAGCCGAAGAAGAAGAAAGGTCAGTCCATTACCCTCTCTGAGTTTCAGACCTATGGCGGTCCTAAGCCGTCGGCTCAATCCAGTGAGCCAAAGGGTCTTACGACCGAAGATCTCATGATGCTTCCGACGGGTCCGCGTCAGCGAACGGCGGAGGAACTGGACCGCAACCGGCTCGGAGGAGGTTTCAAGAGTTGGGGTCAGAATAGTTTGTATGACAGGGGAAATCGGTATTCTAATGGTGAAGATTCGCCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGAGTCGAGGAGGAGTGGCGATGGATCCAATAGGGAATTCAGACGGGAATCTTTCTCCTCTAGGGCTGATGAGATTGATGATTGGGGCGCTGGGAAGAAGCCTATGATGGGTAATGGGTTTGAGAGGAGAGAGAGAGGAGGAGGAGGTTTTTTCGATTCGCATTCGTCGAAAGCGGACGAATCTGATAGTTGGGTTTCAAATAAGAGCTTTTCATCTTCTGAGGGTCGAAGATCAAGCGGTATAGGTGGCGGATTTGAGAGAGAGCGAAGAGGAGGATTTCCCTCAAACGGTGGTGGCGCCGATTCGGATAATTGGGGTAGAAAATCTGAAGGGGCTAGAGGTGGAATCGGTGAGAACGGTGGTGGGGCTGATTCGGATAGCTGGGGCAAAAAATCTGAAGCGACTAGAGGTGGAATTAGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATTCCTTTGAACAACGGGAATCAGGAGGCTTCTGGTGCGGCAGTAAAGCCAAAGGGTTCCAATCCTTTTGGAAATGCAAGACCAAGGGAACAGGTATTGGCTGAGAAGGGGCAGGACTGGAAGAAGATCGATGAGGAGCTTGAGTCAATGAAAATTAAGGATACGGTTGAGAGGGCTGAGAGATCAAGTGGGGCTTCCTTTGAGAGAAAAGGCTTTGGAGTTCGGAGTGGTCGGTCTCCCGAGGATCGGTCAGGGAGGAGTTGGAGGAGGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGAGGTGGTTGGTGATGGACCTGCTGAGGAAAACTGA 1230 53.33 MAATMSPWGKPGAWALDAEEHEAELLKDQQDLSRSQSEPSADFPSLAAAAATKPKKKKGQSITLSEFQTYGGPKPSAQSSEPKGLTTEDLMMLPTGPRQRTAEELDRNRLGGGFKSWGQNSLYDRGNRYSNGEDSPNSRRGSRVFDESRRSGDGSNREFRRESFSSRADEIDDWGAGKKPMMGNGFERRERGGGGFFDSHSSKADESDSWVSNKSFSSSEGRRSSGIGGGFERERRGGFPSNGGGADSDNWGRKSEGARGGIGENGGGADSDSWGKKSEATRGGISERPRLNLQPRSIPLNNGNQEASGAAVKPKGSNPFGNARPREQVLAEKGQDWKKIDEELESMKIKDTVERAERSSGASFERKGFGVRSGRSPEDRSGRSWRRPESVESRPQSAEVVGDGPAEEN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11495604 11498107 - Tan0000846.1 Tan05g1181 752489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1181 409 MobiDBLite consensus disorder prediction 208 224 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 15 31 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 183 207 - -
Tan05g1181 409 Coils Coil 18 38 - -
Tan05g1181 409 Pfam Plant specific eukaryotic initiation factor 4B 7 367 IPR010433 GO:0003743(InterPro)
Tan05g1181 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 394 IPR010433 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)
Tan05g1181 409 MobiDBLite consensus disorder prediction 61 85 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 371 393 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 329 362 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 1 409 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 120 138 - -
Tan05g1181 409 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2122 Tan-Chr2:90682678 Tan05g1181 Tan-Chr5:11495604 3.20E-31 dispersed
Tan05g3175 Tan-Chr5:83636483 Tan05g1181 Tan-Chr5:11495604 7.20E-06 transposed
Tan02g0706 Tan-Chr2:6598725 Tan05g1181 Tan-Chr5:11495604 6.40E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1181 K03258 - csv:101214573 635.95