Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1191 ATGGATCAACTAATTCGACGCGACACTCATATTCAGAATCCAGCTGCATCCTTCGTTGAACCGTGCATTGAGCTTTCAGGGCACCCAAATCGCTCTCAATCCAGTTCCAGGTCTGAAGGGGAGTTGAAGGATTCTGCAGCTGCTAGAAGACTTCAGAAGGCTGACAAAGAGAAACTAAGAAGGGACCGATTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCTAATGCTGAAGGATTTGACATCTCAAGTTAACAAGCTGAAAACTGAGTATGCAACATTAACAGAAGAATCACGTGAGCTAGCCCAGGAAAAGAATGATTTGAGAGAAGAGAAGGTGTTAATCAAATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAAAGACTCGGTGCTACATACCCTTGGGCTGCCATGGCCCCTGCTCCCTTTCCATTTCCAGTGCCGATGCAAATGCCTCCAGGGCCATTTCCCCTGCATCCATCCTTGCAGCCTTACACGTTCTATGGAAACCAGAATCCTGGTGTAATTGCAAACCCTTGTTCCCCCTTCATCCCATACATAGCTCCTAATTCCTTAATTGAGCAGCAGTCCTCTCGAAATGTACCGCCTTTCGTTCGTCCAGGTAATCAGTCTCATAACTTGAGCAAGCAAGATACCGGAAGCAAGTCCTCAGGTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACATACCTGGTGTTGAAGACTCCTGGATCTTCCACAGATCAGGATACAACGTTTGAACAAACAAATGGTAAGAACAGGAAGGAAAATAATCAATCAGAAGTAGAATTAGAGGAGAGTTCTTCAAGTGGATGTTCTTTATCTCGTAGTTTAGAGGCCAATTCGTTTAGTAGCACACTCAATGGACGAAAATCTACTGATACATGTGGAAACACATAA 990 42.83 MDQLIRRDTHIQNPAASFVEPCIELSGHPNRSQSSSRSEGELKDSAAARRLQKADKEKLRRDRLNEQFVELGNILDPDRPKNDKATILMDTILMLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKVLIKSDIENLNAQYQQRLGATYPWAAMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFYGNQNPGVIANPCSPFIPYIAPNSLIEQQSSRNVPPFVRPGNQSHNLSKQDTGSKSSGESKIEKSVDSNEVATYLVLKTPGSSTDQDTTFEQTNGKNRKENNQSEVELEESSSSGCSLSRSLEANSFSSTLNGRKSTDTCGNT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11789296 11797171 - Tan0014788.1 Tan05g1191 752499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1191 329 MobiDBLite consensus disorder prediction 218 329 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 293 329 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 25 57 - -
Tan05g1191 329 Coils Coil 95 143 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 27 41 - -
Tan05g1191 329 CDD bHLH_AtILR3_like 53 127 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 261 277 - -
Tan05g1191 329 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983(InterPro)
Tan05g1191 329 SMART finulus 54 104 IPR011598 GO:0046983(InterPro)
Tan05g1191 329 Gene3D - 46 127 IPR036638 GO:0046983(InterPro)
Tan05g1191 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983(InterPro)
Tan05g1191 329 MobiDBLite consensus disorder prediction 278 292 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 218 241 - -
Tan05g1191 329 MobiDBLite consensus disorder prediction 42 57 - -
Tan05g1191 329 PANTHER TRANSCRIPTION FACTOR BHLH121 25 322 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Tan05g1191 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 116 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2084 Tan-Chr3:75709675 Tan05g1191 Tan-Chr5:11789296 1.10E-50 dispersed
Tan05g1191 Tan-Chr5:11789296 Tan05g1193 Tan-Chr5:11789296 9.70E-119 dispersed
Tan05g1191 Tan-Chr5:11789296 Tan05g1192 Tan-Chr5:11789296 3.40E-111 tandem
Tan03g2083 Tan-Chr3:75709675 Tan05g1191 Tan-Chr5:11789296 1.40E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27488 PF00010 HLH 2.00E-07 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1191 - - - 0.0