Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1200 ATGGAGGTCGCCTTCTCTTCCAAGCCTCAATCACTGACCTTGAATCCATGTCTTCCTCTCAATTCTTCTTCCTCCTTCTCTTACACTCGCCTCCGCTTCCTTCGTCGCCAATTCCTTGGCTCTGGCCACAATCTCCGCCCGCCGGATGCCCTGCGCTCTCGACGGAGGTCCAGGAAGGTTGGCCTCCTTGTTCAGTCTCCGAGATGCATCTTCCGAGCTACGTTGAGTTCCAATCCGGTTCTCATCGTTGTTGCTGTCGTTACCTTCTCCGCTGTCTCGTTTATCTATATGAACTTAAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTCCAAAGCTGGCCTTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTTGATGGTCAGGTAATGGGCTTTAGGGATCATCATGGTGATTTTTTAGAGCAGAACATTGCCATAAAGGATAGAGCTGAAGAGAGAAGTTATTCTGGGGAAGAAGAGCCTGTTCTGCAGCTTCAAAAGTCAGTTCTGTCACATGAGGCCAGCGTCACCGAAACATTGCAGCCATCCATTTCTGAAGTTACTACTTCTAAGGATAGTGATTCTCTGTTGTCAGATGAAAGTGAAGCAGCAGATCCTTCTCTTCTTTCTGATATCTTTGAATCTGGCATCCTGCAGCCTCTTATTTTTGCCAATGGCATGACTCACTTGCAACTAAACGTATCTGATGTCAAACCCCACTCTGACTTGCCCATTGTGGTTGATACAACTGAGCTTCCACCTGTTCCTGGTCCTTTATATAGTGTATATAATCAAGTGACTCAACATTTCAAAGCAGATGGTGAACTTCTAAAAGAGGAAAAATTAACCAGTTCCAACTTTCTAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAGTCAAATGGCAACTTCTTCTCGTAGTTCTCCTATATACAACCAAAAATTTTCTTCAGTGATGATTAATGGTCTCTCAAGAGGAGCAGAATTAGTGTCAGAGGATTCTCTTCAAATTGCAGGATATGTTGAAAGAAAAGTACCTGTTGCAAGATACAAGGAAGGTTCTTCAGGGGACAGAAATAAATCTGTAGGTGGCAACAATATTTCAAGACATGGGGAAAGAAAAGAACCCCGTCTGCATAAAGGGAAATTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCATAACAAAAATCTTCATGCAGATCAATTTAAAGCCTACAATCAATGTCTGAAAGGTGGAAGGTTGCACGAATGTATCAAAGTACTTCAAGATATGGAAAGAGAAGGCTTATTGGATATGAACAAGGTTTATCATGGAAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCAAACTTATTGCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGCATGAAAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGAGTGGAACCTAATGTTCACACATATGGTGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTGTACGGAATTATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCAGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGGGCTGAGCTACATCCTATAGAGCCTGATCATATTACAATTGGTGCGTTGATCAAGGCATGTGCGAATGCTGGCCAGGTTGATCGGGCAAGAGAAGTGTATAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGTAGTCAATCTGGTGATTGGGACTTTGCTTCGAGTGTATATCAAGATATGACCAGGAAAGGAGTACAACCTGACGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTAGGGATATGTGTTGGCATTGTATCATATAGTTCGTTGATGGGCGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCATTGGAACTGTTTGAGGATCTCAAGTGTATGAAATTGAAGCTAACTGTTTCAACTGTGAATGCACTAATAACTGCAATGTGTGATGGGGAACAACTACAAATGGCTATGGATATTCTGACAGAAATGAAGGGATTGGGACTCTACCCAAACAACATTACATACTCCATACTTATGGCAGCAAGTGAAAAGAATGATGATTTAGAAATTGCCCTCATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAAGTGCATAATTGGCCTGTGCCTACGAAGAATTGCAGAGCCCTCTGCCCTTGATAGACCACTCTTGTCTCTTGACACTAGATGGCCTCAAGTCGATAGTAAGTGGACAGCACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGGTCCGAGCATCGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCTGCCTTAAAAGATAGACTCATAGAAAACATCGGAGTAAGTGCTGACACATCAAGATCTTCAAATCTCTGCTCCTTGATATATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCACTTGTATCCCTCAAAGGAAGTCCTATTGTTGTAGATGTCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTACTTTCAGTTGAGACGACTCAAATTCTCTCTTCCAAGGGGGAGAGGACCATTAACCTTGCGGGAAGGGTTGGACAAGCAGTTGCGGCATTGTTGAGAAGACTTGGACTTCCCTACCAGGGAAGTGAATCAAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAGAAGATGGTTACAACCAAAACATTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTCAGCTCGTTTCAGTCGCGACTAAGAAAAGGAATAAGTCATCAGCAGCGTAATATTCGCTCTGGGAATCTATCATTGGATTGA 3312 43.0 MEVAFSSKPQSLTLNPCLPLNSSSSFSYTRLRFLRRQFLGSGHNLRPPDALRSRRRSRKVGLLVQSPRCIFRATLSSNPVLIVVAVVTFSAVSFIYMNLNRRKKNAVERSQSPKLALSQLGRGINWSVDGQVMGFRDHHGDFLEQNIAIKDRAEERSYSGEEEPVLQLQKSVLSHEASVTETLQPSISEVTTSKDSDSLLSDESEAADPSLLSDIFESGILQPLIFANGMTHLQLNVSDVKPHSDLPIVVDTTELPPVPGPLYSVYNQVTQHFKADGELLKEEKLTSSNFLIEEPAREDIYMFYEDTKSSSQMATSSRSSPIYNQKFSSVMINGLSRGAELVSEDSLQIAGYVERKVPVARYKEGSSGDRNKSVGGNNISRHGERKEPRLHKGKFVNGLPYPNGKHVHNKNLHADQFKAYNQCLKGGRLHECIKVLQDMEREGLLDMNKVYHGKFFNICKSKKAVQEAFQYTKLIANPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALIKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSGDWDFASSVYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGICVGIVSYSSLMGACSNAKNWQKALELFEDLKCMKLKLTVSTVNALITAMCDGEQLQMAMDILTEMKGLGLYPNNITYSILMAASEKNDDLEIALMLLSQAKEDGIVPTLTMYKCIIGLCLRRIAEPSALDRPLLSLDTRWPQVDSKWTAQALMVYREIIEAGIGPSIEVLSQVLGCLQIPHDPALKDRLIENIGVSADTSRSSNLCSLIYGFGEYDPRAFSLLEEAASLGVAPLVSLKGSPIVVDVKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLSVETTQILSSKGERTINLAGRVGQAVAALLRRLGLPYQGSESSGKIRINGLALRRWLQPKHSDSLSGKPGEFSSFQSRLRKGISHQQRNIRSGNLSLD 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11874321 11885602 + Tan0005782.1 Tan05g1200 752508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1200 1103 Gene3D Tetratricopeptide repeat domain 403 544 IPR011990 GO:0005515(InterPro)
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Tan05g1200 1103 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 614 705 - -
Tan05g1200 1103 Pfam PPR repeat 728 755 IPR002885 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 795 IPR002885 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 726 760 IPR002885 -
Tan05g1200 1103 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 1 1102 IPR053303 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 796 830 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 517 550 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 624 654 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 551 584 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 659 692 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 728 761 IPR002885 -
Tan05g1200 1103 NCBIfam pentatricopeptide repeat 482 515 IPR002885 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 614 IPR002885 -
Tan05g1200 1103 MobiDBLite consensus disorder prediction 363 386 - -
Tan05g1200 1103 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 706 852 - -
Tan05g1200 1103 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 428 559 - -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Tan05g1200 1103 Gene3D Tetratricopeptide repeat domain 545 631 IPR011990 GO:0005515(InterPro)
Tan05g1200 1103 Gene3D Tetratricopeptide repeat domain 734 850 IPR011990 GO:0005515(InterPro)
Tan05g1200 1103 Gene3D Tetratricopeptide repeat domain 632 733 IPR011990 GO:0005515(InterPro)
Tan05g1200 1103 Pfam Pentacotripeptide-repeat region of PRORP 557 721 IPR033443 -
Tan05g1200 1103 Pfam Pentacotripeptide-repeat region of PRORP 421 556 IPR033443 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Tan05g1200 1103 MobiDBLite consensus disorder prediction 183 204 - -
Tan05g1200 1103 Pfam PPR repeat family 762 805 IPR002885 -
Tan05g1200 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1200 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35