Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g1237 ATGAAAATGAAATTGAAATCGAAATCGAAATCCCTCCCTTCTCAGGGCGATGCTCTGGCGGACCTTGAATGGGTTTCTCAATTCGTCGACGATTCTTGCTCCGAATTTTCCTGCGCCGCCGTGGCTTTGAACCGCTCCGAACCGGAAAGGAAACTCGCCGGAGGTGTAATTTCATGTTTGCCGACGTTTTTTCCGGTCAGACCGAGGACGAAAAGGTCAAGACAAAGCCGGCAAGCGAAATCCACCGGTTCTTACCTCAACCAATCGCCGTCGTCGTCCTCCTCGTCGACGTCCTCCGGCGTTTCCTCCGCCGCACCGTGGTTCATCTTCTCCGAGGCCGGCGAGAACGTAGACTCTTCGAACGCCTCCGGCGAGCCTCCAAAGAAGCAAAGGAAAAAGTCATCGTCGTCGCCGGCGGCGGCTCTTCAAGCCGCCGGTTCGACCGGCCAGATTCCGCGGCGGTGCAGTCATTGTCTGGTTCAGAAGACCCCACAGTGGCGGACCGGTCCACACGGGGCCAAAACGCTCTGCAACGCTTGTGGGGTCCGGTATAAATCCGGTCGGCTCTTCCCCGAGTATAGACCGGCGTTGAGCCCCACTTTTTGCAGCGGCGTTCACTCAAACAGTCATCGGAAAGTGCTCGAAATGAGGAAAATGAAGGACGTTCCTGAACCGGCGACTGAGTTGACCCCAATGGTCTCAAGTTACTAA 711 56.12 MKMKLKSKSKSLPSQGDALADLEWVSQFVDDSCSEFSCAAVALNRSEPERKLAGGVISCLPTFFPVRPRTKRSRQSRQAKSTGSYLNQSPSSSSSSTSSGVSSAAPWFIFSEAGENVDSSNASGEPPKKQRKKSSSSPAAALQAAGSTGQIPRRCSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGVHSNSHRKVLEMRKMKDVPEPATELTPMVSSY 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12837964 12840096 - Tan0010290.2 Tan05g1237 752545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g1237 236 ProSiteProfiles GATA-type zinc finger domain profile. 153 185 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1237 236 CDD ZnF_GATA 154 211 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1237 236 FunFam GATA transcription factor 145 229 - -
Tan05g1237 236 Gene3D - 147 221 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan05g1237 236 MobiDBLite consensus disorder prediction 116 148 - -
Tan05g1237 236 MobiDBLite consensus disorder prediction 68 100 - -
Tan05g1237 236 MobiDBLite consensus disorder prediction 77 100 - -
Tan05g1237 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 212 - -
Tan05g1237 236 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1237 236 PANTHER GATA TRANSCRIPTION FACTOR 13 220 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan05g1237 236 SMART GATA_3 149 199 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan05g1237 236 Pfam GATA zinc finger 155 188 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g1237 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1237 Tan-Chr5:12837964 Tan06g0259 Tan-Chr6:2097840 1.60E-30 dispersed
Tan05g1236 Tan-Chr5:12837964 Tan05g1237 Tan-Chr5:12837964 1.80E-112 tandem
Tan05g1237 Tan-Chr5:12837964 Tan05g1238 Tan-Chr5:12837964 1.30E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27490 PF00320 GATA 1.20E-15 CL0167 Tan TF